Endless Forams: >34,000 Modern Planktonic Foraminiferal Images for Taxonomic Training and Automated Species Recognition Using Convolutional Neural Networks

Author:

Hsiang Allison Y.1ORCID,Brombacher Anieke2ORCID,Rillo Marina C.23ORCID,Mleneck‐Vautravers Maryline J.4ORCID,Conn Stephen5,Lordsmith Sian5,Jentzen Anna6,Henehan Michael J.7ORCID,Metcalfe Brett89ORCID,Fenton Isabel S.1011ORCID,Wade Bridget S.12ORCID,Fox Lyndsey3ORCID,Meilland Julie13ORCID,Davis Catherine V.14ORCID,Baranowski Ulrike15,Groeneveld Jeroen16ORCID,Edgar Kirsty M.15ORCID,Movellan AuroreORCID,Aze Tracy17,Dowsett Harry J.18ORCID,Miller C. Giles3ORCID,Rios Nelson19,Hull Pincelli M.20

Affiliation:

1. Department of Bioinformatics and GeneticsSwedish Museum of Natural History Stockholm Sweden

2. School of Ocean and Earth Science, National Oceanography Centre SouthamptonUniversity of Southampton Southampton UK

3. Department of Earth SciencesNatural History Museum London UK

4. Godwin Laboratory for Paleoclimate Research, Department of Earth SciencesUniversity of Cambridge Cambridge UK

5. School of Earth and Ocean SciencesCardiff University Cardiff UK

6. Department of Climate GeochemistryMax Planck Institute for Chemistry Mainz Germany

7. GFZ German Research Centre for Geosciences Potsdam Germany

8. Laboratoire des Sciences du Climat et de l'Environnement, LSCE/IPSL, CEA‐CNRS‐UVSQ, Université Paris‐Saclay France

9. Earth and Climate Cluster, Department of Earth Sciences, Faculty of SciencesVU University Amsterdam Amsterdam The Netherlands

10. Department of Life SciencesNatural History Museum London UK

11. Department of Earth SciencesUniversity of Oxford Oxford UK

12. Department of Earth SciencesUniversity College London London UK

13. MARUM, Universität Bremen, Leobener Straße 8 Bremen Germany

14. Department of Earth and Planetary SciencesUniversity of California Davis CA USA

15. School of Geography, Earth and Environmental SciencesUniversity of Birmingham Birmingham UK

16. Alfred Wegener Institute, Helmholtz Center for Polar and Marine Research Bremerhaven Germany

17. School of Earth and EnvironmentUniversity of Leeds Leeds UK

18. Florence Bascom Geoscience CenterU.S. Geological Survey Reston VA USA

19. Biodiversity Informatics and Data Science, Peabody Museum of Natural HistoryYale University New Haven CT USA

20. Department of Geology and GeophysicsYale University New Haven CT USA

Funder

Natural Environment Research Council

Publisher

American Geophysical Union (AGU)

Subject

Paleontology,Atmospheric Science,Oceanography

Reference65 articles.

1. Abadi M. Agarwal A. Barham P. Brevdo E. Chen Z. Citro C. Corrado G. S. Davis A. Dean J. Devin M. Ghemawat S. Goodfellow I. Harp A. Irving G. Isard M. Jia Y. Jozefowicz R. Kaiser L. Kudlur M. Levenberg J. Mane D. Monga R. Moore S. Murray D. Olah C. Schuster M. Shlens J. Steiner B. Sutskever I. Talwar K. Tucker P. Vanhoucke V. Vasudevan V. Viegas F. Vinyals O. Warden P. Wattenberg M. Wicke M. Yu Y. Zheng X.(2016).Large‐scale machine learning on heterogeneous systems.arXiv. 1603.04467.

2. Reproducibility of species recognition in modern planktonic foraminifera and its implications for analyses of community structure

3. The cryptic and the apparent reversed: lack of genetic differentiation within the morphologically diverse plexus of the planktonic foraminifer Globigerinoides sacculifer

4. Species identification by experts and non-experts: comparing images from field guides

5. Species identification by conservation practitioners using online images: accuracy and agreement between experts

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