Sat-BSA: an NGS-based method using local <i>de novo</i> assembly of long reads for rapid identification of genomic structural variations associated with agronomic traits-Reference-Cited by-同舟云学术

Sat-BSA: an NGS-based method using local de novo assembly of long reads for rapid identification of genomic structural variations associated with agronomic traits

Published:2021 Issue:3 Volume:71 Page:299-312
ISSN:1344-7610
Container-title:Breeding Science
language:en
Short-container-title:Breed. Sci.

Author:

Segawa Tenta¹,Nishiyama Chisato¹,Tamiru-Oli Muluneh²,Sugihara Yu³,Abe Akira⁴,Sone Hinako¹,Itoh Noriaki¹,Asukai Mayu¹,Uemura Aiko⁴,Oikawa Kaori⁴,Utsushi Hiroe⁴,Ikegami-Katayama Ayako¹,Imamura Tomohiro¹,Mori Masashi¹,Terauchi Ryohei⁴,Takagi Hiroki¹

Affiliation:

1. Ishikawa Prefectural University

2. Department of Animal, Plant and Soil Sciences, AgriBio Building, La Trobe University

3. Kyoto University

4. Iwate Biotechnology Research Center

Publisher

Japanese Society of Breeding

Subject

Plant Science,Genetics,Agronomy and Crop Science

Link

https://www.jstage.jst.go.jp/article/jsbbs/71/3/71_20148/_pdf

Reference48 articles.

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2. Abe, A., H. Takagi, S. Natsume, H. Yaegashi, H. Kikuchi, K. Yoshida, S. Kosugi, H. Saitoh, N. Urasaki, H. Matsumura et al. (2016) Rice breeding based on whole genome sequencing using next-generation sequencer. Seikagaku 88: 44–53 (in Japanese).

3. Abe, A., H. Takagi, H. Yaegashi, S. Natsume, H. Utsushi, M. Tamiru and R. Terauchi (2018) Next-generation breeding of rice by whole-genome approaches. In: Rice Genomics, Genetics and Breeding, Springer, Singapore, pp. 511–522.

4. Ashikari, M. and M. Matsuoka (2006) Identification, isolation and pyramiding of quantitative trait loci for rice breeding. Trends Plant Sci. 11: 344–350.

5. Boliko, M.C. (2019) FAO and the situation of food security and nutrition in the world. J. Nutr. Sci. Vitaminol. 65 (Suppl.): S4–S8.

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