Draft Genome of the Insect-Parasitic Nematode <i>Bradynema listronoti</i>-Reference-Cited by-同舟云学术

Draft Genome of the Insect-Parasitic Nematode Bradynema listronoti

Published:2022-02-01 Issue:1 Volume:54 Page:
ISSN:2640-396X
Container-title:Journal of Nematology
language:en
Short-container-title:

Author:

Ste-Croix Dave T.¹,Gagnon Annie-Ève¹,Mimee Benjamin¹

Affiliation:

1. Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu Research and Development Centre, Saint-Jean-sur-Richelieu , QC J3B 3E6 , Canada

Abstract

Abstract Bradynema listronoti is an insect-parasitic nematode known to infect the carrot weevil, Listronotus oregonensis. We present the first sequence for this species and for any Allantonematidae, produced with a combination of short and long reads. The draft genome of B. listronoti is 80.6 Mb in size, assembled in 152 scaffolds.

Publisher

Walter de Gruyter GmbH

Link

https://www.sciendo.com/pdf/10.2478/jofnem-2022-0047

Reference22 articles.

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. Journal of Molecular Biology 215:403–410.

2. Barnett, D. W., Garrison, E. K., Quinlan, A. R., Strömberg, M. P., and Marth, G. T. 2011. BamTools: a C++ API and toolkit for analyzing and managing BAM files. Bioinformatics 27:1691–1692

3. Bruna, T., Hoff, K. J., Lomsadze, A., Stanke, M., and Borodovsky, M. 2021. BRAKER2: Automatic eukaryotic genome annotation with GeneMark-EP+ and AUGUSTUS Supported by a Protein Database. NAR Genomics and Bioinformatics 3:lqaa108.

4. Challis, R., Richards, E., Rajan, J., Cochrane, G., and Blaxter, M. 2020. BlobToolKit – Interactive quality assessment of genome assemblies. G3 Genes|Genomes|Genetics 10:1361–1374.

5. Chen, S., Zhou, Y., Chen, Y., and Gu, J. 2018. fastp: An ultra-fast all-in-one FASTQ preprocessor. Bioinformatics 34:i884–i890.