Substantial enhancement of high polymorphic SSR marker development using in silico method from 18 available rice blast fungus genome sequences and its application in genetic diversity assessment-Reference-Cited by-同舟云学术

Substantial enhancement of high polymorphic SSR marker development using in silico method from 18 available rice blast fungus genome sequences and its application in genetic diversity assessment

Published:2019-06-03 Issue:9 Volume:74 Page:1181-1189
ISSN:0006-3088
Container-title:Biologia
language:en
Short-container-title:Biologia

Author:

Ngernmuen Athipat,Suktrakul Worawit,Damchuay Katanyutita,Longya Apinya,Kate-Ngam Sureeporn,Jantasuriyarat Chatchawan^ORCID

Funder

Development and Science Achievement Scholarship of Thailand

the National Research Council of Thailand

Omics Center for Agriculture, Bioresources, Food and Health, Kasetsart University

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Plant Science,Genetics,Molecular Biology,Animal Science and Zoology,Biochemistry,Ecology, Evolution, Behavior and Systematics

Link

http://link.springer.com/content/pdf/10.2478/s11756-019-00264-5.pdf

Reference38 articles.

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2. Bakhtiarizadeh MR, Arefnejad B, Ebrahimie E, Ebrahimi M (2012) Application of functional genomic information to develop efficient EST-SSRs for the chicken (Gallus gallus). Genet Mol Res 11(2):1558–1574. https://doi.org/10.4238/2012.May.21.12

3. Brondani C, Brondani RPV, Garrido LR, Ferreira ME (2000) Development of microsatellite markers for the genetic analysis of Magnaporthe grisea. Genet Mol Biol 23(4):753–762. https://doi.org/10.1590/S1415-47572000000400009

4. Cai G, Leadbetter CW, Muehlbauer MF, Molnar TJ, Hillman BI (2013) Genome-wide microsatellite identification in the fungus Anisogramma anomala using Illumina sequencing and genome assembly. PLoS One 8(11):e82408. https://doi.org/10.1371/journal.pone.0082408

5. Cavagnaro PF, Chung SM, Manin S, Yildiz M, Ali A, Alessandro MS, Iorizzo M, Senalik DA, Simon PW (2011) Microsatellite isolation and marker development in carrot – genomic distribution, linkage mapping, genetic diversity analysis and marker transferability across Apiaceae. BMC Genomics 12:386. https://doi.org/10.1186/1471-2164-12-386

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