Interpreting and integrating genomic tests results in clinical cancer care: Overview and practical guidance

Author:

Casolino Raffaella1ORCID,Beer Philip A.12,Chakravarty Debyani3,Davis Melissa B.4,Malapelle Umberto5,Mazzarella Luca6,Normanno Nicola7,Pauli Chantal8,Subbiah Vivek9,Turnbull Clare101112,Westphalen C. Benedikt131415,Biankin Andrew V.11617

Affiliation:

1. Wolfson Wohl Cancer Research Center School of Cancer Sciences University of Glasgow Glasgow UK

2. Hull York Medical School York UK

3. Memorial Sloan Kettering Cancer Center New York New York USA

4. Department of Surgery Weill Cornell Medicine New York City New York USA

5. Department of Public Health University of Naples Federico II Naples Italy

6. Laboratory of Translational Oncology and Division of Gastrointestinal Medical Oncology and Neuroendocrine Tumors IEO European Institute of Oncology IRCCS Milan Italy

7. Cell Biology and Biotherapy Unit Istituto Nazionale Tumori IRCCS “Fondazione G. Pascale” Naples Italy

8. Department of Pathology and Molecular Pathology University Hospital Zurich Zurich Switzerland

9. Sarah Cannon Research Institute Nashville Tennessee USA

10. Division of Genetics and Epidemiology The Institute of Cancer Research London UK

11. National Cancer Registration and Analysis Service National Health Service (NHS) England London UK

12. Cancer Genetics Unit The Royal Marsden NHS Foundation Trust London UK

13. Department of Medicine III Ludwig Maximilians University (LMU) Hospital Munich Munich Germany

14. Comprehensive Cancer Center LMU Hospital Munich Munich Germany

15. German Cancer Consortium, LMU Hospital Munich Munich Germany

16. West of Scotland Pancreatic Unit Glasgow Royal Infirmary Glasgow UK

17. South Western Sydney Clinical School Liverpool New South Wales Australia

Abstract

AbstractThe last decade has seen rapid progress in the use of genomic tests, including gene panels, whole‐exome sequencing, and whole‐genome sequencing, in research and clinical cancer care. These advances have created expansive opportunities to characterize the molecular attributes of cancer, revealing a subset of cancer‐associated aberrations called driver mutations. The identification of these driver mutations can unearth vulnerabilities of cancer cells to targeted therapeutics, which has led to the development and approval of novel diagnostics and personalized interventions in various malignancies. The applications of this modern approach, often referred to as precision oncology or precision cancer medicine, are already becoming a staple in cancer care and will expand exponentially over the coming years. Although genomic tests can lead to better outcomes by informing cancer risk, prognosis, and therapeutic selection, they remain underutilized in routine cancer care. A contributing factor is a lack of understanding of their clinical utility and the difficulty of results interpretation by the broad oncology community. Practical guidelines on how to interpret and integrate genomic information in the clinical setting, addressed to clinicians without expertise in cancer genomics, are currently limited. Building upon the genomic foundations of cancer and the concept of precision oncology, the authors have developed practical guidance to aid the interpretation of genomic test results that help inform clinical decision making for patients with cancer. They also discuss the challenges that prevent the wider implementation of precision oncology.

Publisher

Wiley

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