D-CryptO: deep learning-based analysis of colon organoid morphology from brightfield images

Author:

Abdul Lyan1,Xu Jocelyn2,Sotra Alexander1,Chaudary Abbas3,Gao Jerry4,Rajasekar Shravanthi3ORCID,Anvari Nicky1,Mahyar Hamidreza5,Zhang Boyang13ORCID

Affiliation:

1. School of Biomedical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada

2. Faculty of Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada

3. Department of Chemical Engineering, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada

4. Faculty of Science, McGill University, 845 Sherbrooke Street West, Montreal, QC H3A 0G4, Canada

5. W Booth School of Engineering Practice and Technology, McMaster University, 1280 Main Street West, Hamilton, ON, L8S 4L8, Canada

Abstract

D-CryptO is a deep learning-based tool that can be used to analyze colon organoid structural maturity directly from brightfield images. D-CryptO can be applied in many cases such as analyzing organoids following chemotherapeutic drug treatment.

Funder

Natural Sciences and Engineering Research Council of Canada

Canadian Institutes of Health Research

Publisher

Royal Society of Chemistry (RSC)

Subject

Biomedical Engineering,General Chemistry,Biochemistry,Bioengineering

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