Challenges in constructing accurate methods for hydrogen transfer reactions in large biological assemblies: rare events sampling for mechanistic discovery and tensor networks for quantum nuclear effects

Author:

DeGregorio Nicole12345,Iyengar Srinivasan S.12345ORCID

Affiliation:

1. Department of Chemistry

2. Department of Physics

3. Indiana University

4. Bloomington

5. USA

Abstract

We present two methods that address the computational complexities arising in hydrogen transfer reactions in enzyme active sites.

Funder

Division of Chemistry

Publisher

Royal Society of Chemistry (RSC)

Subject

Physical and Theoretical Chemistry

Reference87 articles.

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3. R. Sheridan , Quantum Mechanical Tunneling in Organic Reactive Intermediates , in Reviews of Reactive Intermediate Chemistry , ed. M. Platz , R. A. Moss and J. Maitland Jones , Wiley-Interscience , Hoboken, NJ , 2007

4. Nonequilibrium Equality for Free Energy Differences

5. Free energy calculation from steered molecular dynamics simulations using Jarzynski’s equality

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