New insight into the aptamer conformation and aptamer/protein interaction by surface-enhanced Raman scattering and multivariate statistical analysis

Author:

Safar Wafa1,Tatar Andra-Sorina2,Leray Aymeric3,Potara Monica2,Liu Qiqian4,Edely Mathieu1,Djaker Nadia4ORCID,Spadavecchia Jolanda4,Fu Weiling5,Derouich Sarra Gam6ORCID,Felidj Nordin6ORCID,Astilean Simion2ORCID,Finot Eric3,Lamy de la Chapelle Marc157ORCID

Affiliation:

1. IMMM – UMR 6283 CNRS, Le Mans Université, Avenue Olivier Messiaen, 72085 Le Mans, Cedex 9, France

2. Babes-Bolyai University, Institute for Interdisciplinary Research in Bio-Nanosciences and Faculty of Physics, Nanobiophotonics and Laser Microspectroscopy Center, 1 Str. M Kogalniceanu, RO-400084 Cluj-Napoca, Romania

3. Laboratoire Interdisciplinaire Carnot de Bourgogne, UMR 6303 CNRS, Université de Bourgogne Franche Comté, F-21078 Dijon, France

4. CNRS, UMR 7244, CSPBAT, Laboratoire de Chimie, Structures et Propriétés de Biomatériaux et d'Agents Thérapeutiques, Université Paris 13, Sorbonne Paris Cité, Bobigny, France

5. Department of Clinical Laboratory Medicine, Southwest Hospital, Third Military Medical University, Chongqing, China

6. Université de Paris, ITODYS, CNRS, UMR 7086, 15 rue J-A de Baïf, F-75013 Paris, France

7. STAR Babes-Bolyai University Institute, 1 Str. M Kogalniceanu, RO-400084 Cluj-Napoca, Romania

Abstract

Combining SERS and statistical analysis, we demonstrated that an aptamer is a flexible molecule that is blocked in a specific conformation to capture its analyte and we provided evidence for the dynamics of the aptamer/protein interaction.

Funder

European Commission

Agence Nationale de la Recherche

Conseil régional de Bourgogne-Franche-Comté

National Natural Science Foundation of China

Conseil Régional des Pays de la Loire

Publisher

Royal Society of Chemistry (RSC)

Subject

General Materials Science

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