From polymers to proteins: the effect of side chains and broken symmetry on the formation of secondary structures within a Wang–Landau approach

Author:

Škrbić Tatjana1234,Badasyan Artem567,Hoang Trinh Xuan8910,Podgornik Rudolf1112131415,Giacometti Achille1234

Affiliation:

1. Dipartimento di Scienze Molecolari e Nanosistemi

2. Università Ca' Foscari di Venezia

3. Campus Scientifico

4. 30170 Venezia Mestre, Italy

5. Material Research Laboratory

6. University of Nova Gorica

7. SI-5270 Ajdovscina, Slovenia

8. Center for Computational Physics Institute of Physics

9. Vietnam Academy of Science and Technology

10. Hanoi, Vietnam

11. Department of Theoretical Physics

12. J. Stefan Institute and Department of Physics

13. Faculty of Mathematics and Physics

14. University of Ljubljana

15. SI-1000 Ljubljana, Slovenia

Abstract

Protein-like systems are studied using models of increasing complexity starting from a tangent-beads chain and gradually adding the possibility of overlapping for consecutive beads, as well the presence of additional smaller beads mimicking side chains, using Wang–Landau techniques.

Publisher

Royal Society of Chemistry (RSC)

Subject

Condensed Matter Physics,General Chemistry

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