Prediction of DNA and RNA structure with the NARES-2P force field and conformational space annealing-Reference-Cited by-同舟云学术

Prediction of DNA and RNA structure with the NARES-2P force field and conformational space annealing

Published:2018 Issue:29 Volume:20 Page:19656-19663
ISSN:1463-9076
Container-title:Physical Chemistry Chemical Physics
language:en
Short-container-title:Phys. Chem. Chem. Phys.

Author:

Sieradzan Adam K.¹²³⁴⁵^ORCID,Golon Łukasz¹²³,Liwo Adam¹²³⁴⁵

Affiliation:

1. Faculty of Chemistry, University of Gdańsk

2. 80-308 Gdańsk

3. Poland

4. School of Computational Sciences, Korea Institute for Advanced Study

5. Seoul 130-722

Abstract

A physics-based method for the prediction of the structures of nucleic acids, which is based on the physics-based 2-bead NARES-2P model of polynucleotides and global-optimization Conformational Space Annealing (CSA) algorithm has been proposed.

Funder

Narodowe Centrum Nauki

Publisher

Royal Society of Chemistry (RSC)

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Link

http://pubs.rsc.org/en/content/articlepdf/2018/CP/C8CP03018A

Reference48 articles.

1. Molecular Structure of Nucleic Acids: A Structure for Deoxyribose Nucleic Acid

2. A Three-Dimensional Model of the Myoglobin Molecule Obtained by X-Ray Analysis

3. Molecular Configuration in Sodium Thymonucleate

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5. A brief history of macromolecular crystallography, illustrated by a family tree and its Nobel fruits

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