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Improving gene regulatory network inference using network topology information

Published:2015 Issue:9 Volume:11 Page:2449-2463
ISSN:1742-206X
Container-title:Molecular BioSystems
language:en
Short-container-title:Mol. BioSyst.

Author:

Nair Ajay¹²³⁴⁵^ORCID,Chetty Madhu⁶⁷⁸⁹,Wangikar Pramod P.⁵²³⁴¹⁰

Affiliation:

1. IITB-Monash Research Academy

2. Indian Institute of Technology Bombay

3. Powai

4. India

5. Department of Chemical Engineering

6. Faculty of Science and Technology

7. Federation University

8. Victoria

9. Australia

10. DBT-Pan IIT Center for Bioenergy

Abstract

(a) maxPiter-algorithm and (b) maxPincrement-algorithm take only a fraction of existing method's time for different network types.

Publisher

Royal Society of Chemistry (RSC)

Subject

Molecular Biology,Biotechnology

Link

http://pubs.rsc.org/en/content/articlepdf/2015/MB/C5MB00122F

Reference36 articles.

1. Modeling and Simulation of Genetic Regulatory Systems: A Literature Review

2. Advantages and limitations of current network inference methods

3. Wisdom of crowds for robust gene network inference

4. Review on statistical methods for gene network reconstruction using expression data

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