A critical assessment of force field accuracy against NMR data for cyclic peptides containing β-amino acids
Author:
Affiliation:
1. Biomolecular NMR Unit
2. IRCCS Ospedale San Raffaele
3. 20132 Milan
4. Italy
5. Dipartimento di Chimica
6. Università degli Studi di Milano
7. 20133 Milan
8. Tumor Biology and Vascular Targeting Unit
Abstract
A critical assessment of the reproducibility of NMR parameters of β amino acids pinpoints the major weaknesses of eight widely used force fields in reproducing the equilibrium conformational properties of highly constrained cyclic peptides containing isoAspartic acid.
Funder
Ministero della Salute
Associazione Italiana per la Ricerca sul Cancro
Publisher
Royal Society of Chemistry (RSC)
Subject
Physical and Theoretical Chemistry,General Physics and Astronomy
Link
http://pubs.rsc.org/en/content/articlepdf/2018/CP/C8CP00234G
Reference74 articles.
1. Therapeutic peptides
2. Structure-Based Design of Inhibitors of Protein-Protein Interactions: Mimicking Peptide Binding Epitopes
3. Molecular Simulation of Conformational Pre-Organization in Cyclic RGD Peptides
4. Spatial Screening for the Identification of the Bioactive Conformation of Integrin Ligands
5. N-Methylation of Peptides and Proteins: An Important Element for Modulating Biological Functions
Cited by 10 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. Mixed Stereochemistry Macrocycle Acts as a Helix-Stabilizing Peptide N-Cap;Journal of the American Chemical Society;2024-08-25
2. Polarizable Force Field of Intrinsically Disordered Proteins with CMAP and Reweighting Optimization;Journal of Chemical Information and Modeling;2022-09-30
3. Molecular Dynamics Simulations of Transmembrane Cyclic Peptide Nanotubes Using Classical Force Fields, Hydrogen Mass Repartitioning, and Hydrogen Isotope Exchange Methods: A Critical Comparison;International Journal of Molecular Sciences;2022-03-15
4. Molecular descriptors suggest stapling as a strategy for optimizing membrane permeability of cyclic peptides;The Journal of Chemical Physics;2022-02-14
5. Glycan-Induced Protein Dynamics in Human Norovirus P Dimers Depend on Virus Strain and Deamidation Status;Molecules;2021-04-07
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3