How strong are hydrogen bonds in the peptide model?

Author:

Dąbrowski Jakub12345,Nowak Wiesław16789ORCID,Ptak Arkadiusz12345ORCID

Affiliation:

1. Institute of Physics

2. Faculty of Technical Physics

3. Poznan University of Technology

4. PL-60965 Poznan

5. Poland

6. Faculty of Physics

7. Astronomy and Informatics

8. Nicolaus Copernicus University

9. PL-87100 Torun

Abstract

We provide a methodology based on the steered molecular dynamics simulations and dynamic force spectroscopy calculations to determine the kinetic and energetic characteristics of hydrogen bonds.

Funder

Ministerstwo Nauki i Szkolnictwa Wyższego

Publisher

Royal Society of Chemistry (RSC)

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Reference50 articles.

1. U. Langel , B. F.Cravatt , A.Graslund , N. G. H.von Heijne , M.Zorko , T.Land and S.Niessen , Introduction to Peptides and Proteins , CRC Press, Taylor & Francis Group: Boca Raton , London, New York , 2010 , pp. 101–122

2. Structure of Myoglobin: A Three-Dimensional Fourier Synthesis at 2 Å. Resolution

3. C. I. Brändén and J.Tooze , Introduction to Protein Structure , Garland Science, Taylor & Francis Group , New York , 1999 , pp. 35–46

4. Abbreviations and Symbols for the Description of the Conformation of Polypeptide Chains

5. Constrained α-Helical Peptides as Inhibitors of Protein-Protein and Protein-DNA Interactions

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