Conformational selection underpins recognition of multiple DNA sequences by proteins and consequent functional actions-Reference-Cited by-同舟云学术

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Conformational selection underpins recognition of multiple DNA sequences by proteins and consequent functional actions

Published:2016 Issue:31 Volume:18 Page:21618-21628
ISSN:1463-9076
Container-title:Physical Chemistry Chemical Physics
language:en
Short-container-title:Phys. Chem. Chem. Phys.

Author:

Naiya Gitashri¹²³⁴,Raha Paromita¹²³⁴,Mondal Manas Kumar⁵⁶⁷⁴,Pal Uttam¹²³⁴,Saha Rajesh¹²³⁴,Chaudhuri Susobhan⁸⁹¹⁰¹¹⁴,Batabyal Subrata⁸⁹¹⁰¹¹⁴,Kumar Pal Samir⁸⁹¹⁰¹¹⁴,Bhattacharyya Dhananjay⁵⁶⁷⁴,Maiti Nakul C.¹²³⁴,Roy Siddhartha¹²¹³¹⁴⁴

Affiliation:

1. Division of Structural Biology and Bioinformatics

2. CSIR-Indian Institute of Chemical Biology

3. Kolkata 700 032

4. India

5. Computational Science Division

6. Saha Institute of Nuclear Physics

7. Kolkata 700064

8. Department of Chemical

9. Biological & Macromolecular Sciences

10. S. N. Bose National Centre for Basic Sciences

11. Kolkata 700 098

12. Department of Biophysics

13. Bose Institute

14. Kolkata

Abstract

Multiple DNA sequence recognition through selection from a pre-existing conformational ensemble leading to different outcomes.

Funder

Council of Scientific and Industrial Research

Department of Science and Technology, Ministry of Science and Technology

Publisher

Royal Society of Chemistry (RSC)

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Link

http://pubs.rsc.org/en/content/articlepdf/2016/CP/C6CP03278H

Reference44 articles.

1. Elucidation of the ELK1 target gene network reveals a role in the coordinate regulation of core components of the gene regulation machinery

2. A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome

3. Origins of Specificity in Protein-DNA Recognition

4. The role of DNA shape in protein–DNA recognition

5. Specificity and Affinity of Lac Repressor for the Auxiliary Operators O2 and O3 Are Explained by the Structures of Their Protein–DNA Complexes

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2. Effect of osmolytes on the EcoRI endonuclease: Insights into hydration and protein dynamics from molecular dynamics simulations;Computational Biology and Chemistry;2023-08

3. Understanding the role of non‐Watson‐Crick base pairs in DNA–protein recognition: Structural and energetic aspects using crystallographic database analysis and quantum chemical calculation;Biopolymers;2022-05-26

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