Exploring ion induced folding of a single-stranded DNA oligomer from molecular simulation studies-Reference-Cited by-同舟云学术

Exploring ion induced folding of a single-stranded DNA oligomer from molecular simulation studies

Published:2016 Issue:23 Volume:18 Page:15899-15910
ISSN:1463-9076
Container-title:Physical Chemistry Chemical Physics
language:en
Short-container-title:Phys. Chem. Chem. Phys.

Author:

Chakraborty Kaushik¹²³⁴⁵,Khatua Prabir¹²³⁴⁵,Bandyopadhyay Sanjoy¹²³⁴⁵

Affiliation:

1. Molecular Modeling Laboratory

2. Department of Chemistry

3. Indian Institute of Technology

4. Kharagpur – 721302

5. India

Abstract

Formation of Na⁺ ion-induced inner-sphere complex folds the DNA strand by bringing two non-sequential residues in close contact with a net free energy change of −4.1 kcal mol⁻¹.

Funder

University Grants Commission

Council of Scientific and Industrial Research

Department of Science and Technology, Ministry of Science and Technology

Publisher

Royal Society of Chemistry (RSC)

Subject

Physical and Theoretical Chemistry,General Physics and Astronomy

Link

http://pubs.rsc.org/en/content/articlepdf/2016/CP/C6CP00663A

Reference79 articles.

1. Sensing DNA Damage Through ATRIP Recognition of RPA-ssDNA Complexes

2. Folded DNA in Action: Hairpin Formation and Biological Functions in Prokaryotes

3. Charge Density of Divalent Metal Cations Determines RNA Stability

4. Tertiary Interactions Determine the Accuracy of RNA Folding

5. Comparative Enzymology and Structural Biology of RNA Self-Cleavage

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