Random conical tilt reconstruction without particle picking in cryo-electron microscopy

Author:

Lan Ti-YenORCID,Boumal Nicolas,Singer Amit

Abstract

A method is proposed to reconstruct the 3D molecular structure from micrographs collected at just one sample tilt angle in the random conical tilt scheme in cryo-electron microscopy. The method uses autocorrelation analysis on the micrographs to estimate features of the molecule which are invariant under certain nuisance parameters such as the positions of molecular projections in the micrographs. This enables the molecular structure to be reconstructed directly from micrographs, completely circumventing the need for particle picking. Reconstructions are demonstrated with simulated data and the effect of the missing-cone region is investigated. These results show promise to reduce the size limit for single-particle reconstruction in cryo-electron microscopy.

Funder

Air Force Office of Scientific Research

Simons Foundation

Moore Family Foundation

National Science Foundation

National Institutes of Health

Publisher

International Union of Crystallography (IUCr)

Subject

Inorganic Chemistry,Physical and Theoretical Chemistry,Condensed Matter Physics,General Materials Science,Biochemistry,Structural Biology

Reference32 articles.

1. Abadi, M., Agarwal, A., Barham, P., Brevdo, E., Chen, Z., Citro, C., Corrado, G. S., Davis, A., Dean, J., Devin, M., Ghemawat, S., Goodfellow, I., Harp, A., Irving, G., Isard, M., Jia, Y., Jozefowicz, R., Kaiser, L., Kudlur, M., Levenberg, J., Mané, D., Monga, R., Moore, S., Murray, D., Olah, C., Schuster, M., Shlens, J., Steiner, B., Sutskever, I., Talwar, K., Tucker, P., Vanhoucke, V., Vasudevan, V., Viégas, F., Vinyals, O., Warden, P., Wattenberg, M., Wicke, M., Yu, Y. & Zheng, X. (2015). TensorFlow, software available from https://www.tensorflow.org/.

2. Structure determination from single molecule X-ray scattering with three photons per image

3. Aliasing error of the exp⁡(β1−z2) kernel in the nonuniform fast Fourier transform

4. Barnett, A. H., Magland, J. & af Klinteberg, L. (2019). SIAM J. Sci. Comput. 41, C479-C504.

5. Bendory, T., Boumal, N., Leeb, W., Levin, E. & Singer, A. (2018). arXiv:1810.00226.

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