A program to analyze the distributions of unmeasured reflections

Author:

Urzhumtseva Ludmila,Urzhumtsev Alexandre

Abstract

Crystallographic Fourier maps may contain barely interpretable or non-interpretable regions if these maps are calculated with an incomplete set of diffraction data. Even a small percentage of missing data may be crucial if these data are distributed non-uniformly and form connected regions of reciprocal space. Significant time and effort can be lost trying to interpret poor maps, in improving them by phase refinement or in fighting against artefacts, whilst the problem could in fact be solved by completing the data set. To characterize the distribution of missing reflections, several types of diagrams have been suggested in addition to the usual plots of completeness in resolution shells and cumulative data completeness. A computer program,FOBSCOM, has been developed to analyze the spatial distribution of unmeasured diffraction data, to search for connected regions of unmeasured reflections and to obtain numeric characteristics of these regions. By performing this analysis, the program could help to save time during structure solution for a number of projects. It can also provide information about a possible overestimation of the map quality and model-biased features when calculated values are used to replace unmeasured data.

Publisher

International Union of Crystallography (IUCr)

Subject

General Biochemistry, Genetics and Molecular Biology

Reference17 articles.

1. PHENIX: a comprehensive Python-based system for macromolecular structure solution

2. Afonine, P. V., Grosse-Kunstleve, R. W. & Adams, P. D. (2005). CCP4 Newsletter on Protein Crystallography, No. 42, http://www.CCP4.ac.uk/newsletters/newsletter42/content.html.

3. The Protein Data Bank

4. The protein data bank: A computer-based archival file for macromolecular structures

5. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

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