ExtSym: a program to aid space-group determination from powder diffraction data

Author:

Markvardsen Anders J.,Shankland Kenneth,David William I. F.,Johnston John C.,Ibberson Richard M.,Tucker Matt,Nowell Harriott,Griffin Tom

Abstract

Once unit-cell dimensions have been determined from a powder diffraction data set and therefore the crystal system is known (e.g.orthorhombic), the method presented by Markvardsen, David, Johnson & Shankland [Acta Cryst.(2001), A57, 47–54] can be used to generate a table ranking the extinction symbols of the given crystal system according to probability. Markvardsenet al.tested a computer program (ExtSym) implementing the method against Pawley refinement outputs generated using theTF12LSprogram [David, Ibberson & Matthewman (1992). Report RAL-92-032. Rutherford Appleton Laboratory, Chilton, Didcot, Oxon, UK]. Here, it is shown thatExtSymcan be used successfully with many well known powder diffraction analysis packages, namelyDASH[David, Shankland, van de Streek, Pidcock, Motherwell & Cole (2006).J. Appl. Cryst.39, 910–915],FullProf[Rodriguez-Carvajal (1993).Physica B,192, 55–69],GSAS[Larson & Von Dreele (1994). Report LAUR 86-748. Los Alamos National Laboratory, New Mexico, USA],PRODD[Wright (2004).Z. Kristallogr.219, 1–11] andTOPAS[Coelho (2003). Bruker AXS GmbH, Karlsruhe, Germany]. In addition, a precise description of the optimal input forExtSymis given to enable other software packages to interface withExtSymand to allow the improvement/modification of existing interfacing scripts.ExtSymtakes as input the powder data in the form of integrated intensities and error estimates for these intensities. The output returned byExtSymis demonstrated to be strongly dependent on the accuracy of these error estimates and the reason for this is explained.ExtSymis tested against a wide range of data sets, confirming the algorithm to be very successful at ranking the published extinction symbol as the most likely.

Publisher

International Union of Crystallography (IUCr)

Subject

General Biochemistry, Genetics and Molecular Biology

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