CCP4 Cloud for structure determination and project management in macromolecular crystallography

Author:

Krissinel Eugene,Lebedev Andrey A.ORCID,Uski VilleORCID,Ballard Charles B.,Keegan Ronan M.,Kovalevskiy Oleg,Nicholls Robert A.ORCID,Pannu Navraj S.,Skubák PavolORCID,Berrisford John,Fando Maria,Lohkamp BernhardORCID,Wojdyr MarcinORCID,Simpkin Adam J.,Thomas Jens M. H.,Oliver Christopher,Vonrhein Clemens,Chojnowski GrzegorzORCID,Basle ArnaudORCID,Purkiss AndrewORCID,Isupov Michail N.ORCID,McNicholas Stuart,Lowe Edward,Triviño Josep,Cowtan KevinORCID,Agirre JonORCID,Rigden Daniel J.ORCID,Uson Isabel,Lamzin VictorORCID,Tews IvoORCID,Bricogne Gerard,Leslie Andrew G. W.ORCID,Brown David G.

Abstract

Nowadays, progress in the determination of three-dimensional macromolecular structures from diffraction images is achieved partly at the cost of increasing data volumes. This is due to the deployment of modern high-speed, high-resolution detectors, the increased complexity and variety of crystallographic software, the use of extensive databases and high-performance computing. This limits what can be accomplished with personal, offline, computing equipment in terms of both productivity and maintainability. There is also an issue of long-term data maintenance and availability of structure-solution projects as the links between experimental observations and the final results deposited in the PDB. In this article, CCP4 Cloud, a new front-end of the CCP4 software suite, is presented which mitigates these effects by providing an online, cloud-based environment for crystallographic computation. CCP4 Cloud was developed for the efficient delivery of computing power, database services and seamless integration with web resources. It provides a rich graphical user interface that allows project sharing and long-term storage for structure-solution projects, and can be linked to data-producing facilities. The system is distributed with the CCP4 software suite version 7.1 and higher, and an online publicly available instance of CCP4 Cloud is provided by CCP4.

Funder

Biotechnology and Biological Sciences Research Council

Medical Research Council

Röntgen-Ångström Cluster

Nederlandse Wetenschappelijke Organisatie

Publisher

International Union of Crystallography (IUCr)

Subject

Structural Biology

Reference59 articles.

1. Privateer: software for the conformational validation of carbohydrate structures

2. Ahdritz, G., Bouatta, N., Kadyan, S., Xia, Q., Gerecke, W. & AlQuraishi, M. (2021). aqlaboratory/openfold: Openfold v1.0.0. https://doi.org/10.5281/zenodo.5709540.

3. iMOSFLM: a new graphical interface for diffraction-image processing withMOSFLM

4. Announcing the worldwide Protein Data Bank

5. The Protein Data Bank

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