ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells-Reference-Cited by-同舟云学术

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ATAC-seq on biobanked specimens defines a unique chromatin accessibility structure in naïve SLE B cells

Published:2016-06-01 Issue:1 Volume:6 Page:
ISSN:2045-2322
Container-title:Scientific Reports
language:en
Short-container-title:Sci Rep

Author:

Scharer Christopher D.,Blalock Emily L.,Barwick Benjamin G.,Haines Robert R.,Wei Chungwen,Sanz Ignacio,Boss Jeremy M.

Publisher

Springer Science and Business Media LLC

Subject

Multidisciplinary

Link

http://www.nature.com/articles/srep27030.pdf

Reference39 articles.

1. Yong, W. H., Dry, S. M. & Shabihkhani, M. A practical approach to clinical and research biobanking. Methods Mol Biol 1180, 137–162, doi: 10.1007/978-1-4939-1050-2_8 (2014).

2. Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, H. Y. & Greenleaf, W. J. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat Methods 10, 1213–1218, doi: 10.1038/nmeth.2688 (2013).

3. Landt, S. G. et al. ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia. Genome research 22, 1813–1831, doi: 10.1101/gr.136184.111 (2012).

4. Davie, K. et al. Discovery of transcription factors and regulatory regions driving in vivo tumor development by ATAC-seq and FAIRE-seq open chromatin profiling. PLoS genetics 11, e1004994, doi: 10.1371/journal.pgen.1004994 (2015).

5. Majumder, P., Gomez, J. A., Chadwick, B. P. & Boss, J. M. The insulator factor CTCF controls MHC class II gene expression and is required for the formation of long-distance chromatin interactions. J Exp Med 205, 785–798 (2008).

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