Ocean-wide comparisons of mesopelagic planktonic community structures

Author:

Rigonato Janaina12ORCID,Budinich Marko34,Murillo Alejandro A5,Brandão Manoela C6ORCID,Pierella Karlusich Juan J7ORCID,Soviadan Yawouvi Dodji6,Gregory Ann C8,Endo Hisashi9ORCID,Kokoszka Florian710,Vik Dean8,Henry Nicolas23ORCID,Frémont Paul1ORCID,Labadie Karine1,Zayed Ahmed A8ORCID,Dimier Céline6,Picheral Marc26,Searson Sarah6,Poulain Julie12,Kandels Stefanie511,Pesant Stéphane1213,Karsenti Eric711,Acinas Silvia G14,Boss Emmanuel15,Cochrane Guy5,de Vargas Colomban23,Gorsky Gabriel2,Grimsley Nigel16,Guidi Lionel26,Hingamp Pascal17,Karp-Boss Lee15,Not Fabrice2,Raes Jeroen18,Sardet Christian2,Speich Sabrina19,Bork Peer520ORCID,Bowler Chris27ORCID,de Vargas Colomban23,Eveillard Damien24ORCID,Gehlen Marion21ORCID,Iudicone Daniele10ORCID,Lombard Fabien26ORCID,Ogata Hiroyuki9ORCID,Stemmann Lars26ORCID,Sullivan Matthew B822ORCID,Sunagawa Shinichi523ORCID,Wincker Patrick12ORCID,Chaffron Samuel24ORCID,Jaillon Olivier12ORCID,

Affiliation:

1. Génomique Métabolique, Genoscope, Institut de Biologie François Jacob, Commissariat à l’Energie Atomique (CEA), CNRS, Université Evry, Université Paris-Saclay , 91000 Evry, France

2. Research Federation for the study of Global Ocean Systems Ecology and Evolution, FR2022/Tara Oceans GOSEE , 3 rue Michel-Ange, 75016 Paris, France

3. Sorbonne Université, CNRS, Station Biologique de Roscoff, AD2M, UMR 7144 , 29680 Roscoff, France

4. Nantes Université, École Centrale Nantes, CNRS, LS2N, UMR 6004 , Nantes F-44000, France

5. Structural and Computational Biology, European Molecular Biology Laboratory , Meyerhofstr. 1, 69117 Heidelberg, Germany

6. Sorbonne Université, CNRS, Institut de la Mer de Villefranche sur mer, Laboratoire d’Océanographie de Villefranche , 06230 Villefranche-sur-Mer, France

7. Institut de Biologie de l’ENS (IBENS), Département de biologie, Ecole normale supérieure, CNRS, INSERM, Université PSL , 75005 Paris, France

8. Department of Microbiology, The Ohio State University , Columbus, OH 43214, USA

9. Bioinformatics Center, Institute for Chemical Research Kyoto University , Gokasho, Uji, Kyoto 611-0011, Japan

10. Stazione Zoologica Anton Dohrn , Villa Comunale, 80121 Naples, Italy

11. Directors’ Research European Molecular Biology Laboratory Meyerhofstr. 1 , 69117 Heidelberg, Germany

12. MARUM, Center for Marine Environmental Sciences, University of Bremen , Bremen, Germany

13. PANGAEA, Data Publisher for Earth and Environmental Science, University of Bremen , Bremen, Germany

14. Department of Marine Biology and Oceanography, Institut de Ciències del Mar (ICM), CSIC , Barcelona, Spain

15. School of Marine Sciences, University of Maine , Orono, ME, USA

16. CNRS, UMR 7232, BIOM , Avenue Pierre Fabre, Banyuls-sur-Mer, France

17. Aix Marseille Univ., Université de Toulon, CNRS, IRD, MIO UM 110 , 13288 Marseille, France

18. Department of Microbiology and Immunology, Rega Institute , KU Leuven, Leuven, Belgium

19. Laboratoire de Physique des Océans, UBO-IUEM , Place Copernic, Plouzané, France

20. Department of Bioinformatics, Biocenter, University of Würzburg , Würzburg, Germany

21. Institut Pierre Simon Laplace, Laboratoire des Sciences du Climat et de l’Environnement, CEA, CNRS, Université Paris-Saclay , 91191 Gif-sur-Yvette cedex, France

22. Department of Civil, Environmental and Geodetic Engineering, The Ohio State University , Columbus, OH 43214, USA

23. Department of Biology; Institute of Microbiology and Swiss Institute of Bioinformatics, ETH Zurich , Zurich 8093, Switzerland

Abstract

Abstract For decades, marine plankton have been investigated for their capacity to modulate biogeochemical cycles and provide fishery resources. Between the sunlit (epipelagic) layer and the deep dark waters, lies a vast and heterogeneous part of the ocean: the mesopelagic zone. How plankton composition is shaped by environment has been well-explored in the epipelagic but much less in the mesopelagic ocean. Here, we conducted comparative analyses of trans-kingdom community assemblages thriving in the mesopelagic oxygen minimum zone (OMZ), mesopelagic oxic, and their epipelagic counterparts. We identified nine distinct types of intermediate water masses that correlate with variation in mesopelagic community composition. Furthermore, oxygen, NO3− and particle flux together appeared as the main drivers governing these communities. Novel taxonomic signatures emerged from OMZ while a global co-occurrence network analysis showed that about 70% of the abundance of mesopelagic plankton groups is organized into three community modules. One module gathers prokaryotes, pico-eukaryotes and Nucleo-Cytoplasmic Large DNA Viruses (NCLDV) from oxic regions, and the two other modules are enriched in OMZ prokaryotes and OMZ pico-eukaryotes, respectively. We hypothesize that OMZ conditions led to a diversification of ecological niches, and thus communities, due to selective pressure from limited resources. Our study further clarifies the interplay between environmental factors in the mesopelagic oxic and OMZ, and the compositional features of communities.

Publisher

Oxford University Press (OUP)

Subject

General Medicine

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