Experimental factors affecting PCR-based estimates of microbial species richness and evenness-Reference-Cited by-同舟云学术

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Experimental factors affecting PCR-based estimates of microbial species richness and evenness

Published:2010-01-21 Issue:5 Volume:4 Page:642-647
ISSN:1751-7362
Container-title:The ISME Journal
language:en
Short-container-title:ISME J

Author:

Engelbrektson Anna,Kunin Victor,Wrighton Kelly C,Zvenigorodsky Natasha,Chen Feng,Ochman Howard,Hugenholtz Philip

Publisher

Springer Science and Business Media LLC

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Link

http://www.nature.com/articles/ismej2009153.pdf

Reference17 articles.

1. Bru D, Martin-Laurent F, Philippot L . (2008). Quantification of the detrimental effect of a single primer-template mismatch by real-time PCR using the 16S rRNA gene as an example. Appl Environ Microbiol 74: 1660–1663.

2. Clarke KR . (1993). Non-parametric multivariate analyses of changes in community structure. Aust J Ecol 18: 117–143.

3. DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K et al. (2006). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069–5072.

4. Hongoh Y, Deevong P, Hattori S, Inoue T, Noda S, Noparatnaraporn N et al. (2006). Phylogenetic diversity, localization, and cell morphologies of members of the candidate phylum TG3 and a subphylum in the phylum Fibrobacteres, recently discovered bacterial groups dominant in termite guts. Appl Environ Microbiol 72: 6780–6788.

5. Huber JA, Morrison HG, Huse SM, Neal PR, Sogin ML, Mark Welch DB . (2009). Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure. Environ Microbiol 11: 1292–1302.

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