Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

Author:

Callahan Benjamin J,McMurdie Paul J,Holmes Susan P

Publisher

Springer Science and Business Media LLC

Subject

Ecology, Evolution, Behavior and Systematics,Microbiology

Reference22 articles.

1. Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Xu ZZ et al. (2017). Deblur rapidly resolves single-nucleotide community sequence patterns. mSystems 2: e00191–16.

2. Baxter NT, Ruffin MT, Rogers MA, Schloss PD . (2016). Microbiota-based model improves the sensitivity of fecal immunochemical test for detecting colonic lesions. Genome Med 8: 37.

3. Berry MA, White JD, Davis TW, Jain S, Johengen TH, Dick GJ et al. (2017). Are oligotypes meaningful ecological and phylogenetic units? A case study of Microcystis in freshwater lakes. Front Microbiol 8: 365.

4. Bokulich NA, Subramanian S, Faith JJ, Gevers D, Gordon JI, Knight R et al. (2013). Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nat Methods 10: 57–59.

5. Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP . (2016a). DADA2: high-resolution sample inference from Illumina amplicon data. Nat Methods 13: 581–583.

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