Towards a purely physics-based computational binding affinity estimation
Author:
Publisher
Springer Science and Business Media LLC
Subject
Computer Networks and Communications,Computer Science Applications,Computer Science (miscellaneous)
Link
https://www.nature.com/articles/s43588-023-00396-4.pdf
Reference5 articles.
1. Mobley, D. L. & Gilson, M. K. Predicting binding free energies: Frontiers and benchmarks. Annu. Rev. Biophys. 46, 531–558 (2017). A review article that presents different binding free energy estimation methods.
2. Woo, H. J. & Roux, B. Calculation of absolute protein–ligand binding free energy from computer simulations. Proc. Natl Acad. Sci. USA 102, 6825–6830 (2005). A research article that pioneers the stratification strategy for binding affinity estimation.
3. Gumbart, J. C., Roux, B. & Chipot, C. Standard binding free energies from computer simulations: What is the best strategy? J. Chem. Theory Comput. 9, 794–802 (2013). A research article that implements the stratification strategy for binding affinity estimation.
4. Fu, H. et al. Accurate determination of protein:ligand standard binding free energies from molecular dynamics simulations. Nat. Protoc. 17, 1114–1141 (2022). A protocol article that presents the implementation of the stratification strategy for binding affinity estimation.
5. Govind Kumar, V., Agrawal, S., Kumar, T. K. S. & Moradi, M. Mechanistic picture for monomeric human fibroblast growth factor 1 stabilization by heparin binding. J. Phys. Chem. B 125, 12690–12697 (2021). A research article that presents a computational–experimental investigation of the hFGF1:heparin interaction.
Cited by 1 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献
1. Binding affinity predictions with hybrid quantum-classical convolutional neural networks;Scientific Reports;2023-10-20
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3