Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
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Published:2014-07-06
Issue:8
Volume:32
Page:822-828
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ISSN:1087-0156
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Container-title:Nature Biotechnology
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language:en
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Short-container-title:Nat Biotechnol
Author:
Nielsen H Bjørn, , Almeida Mathieu, Juncker Agnieszka Sierakowska, Rasmussen Simon, Li Junhua, Sunagawa Shinichi, Plichta Damian R, Gautier Laurent, Pedersen Anders G, Le Chatelier Emmanuelle, Pelletier Eric, Bonde Ida, Nielsen Trine, Manichanh Chaysavanh, Arumugam ManimozhiyanORCID, Batto Jean-Michel, Quintanilha dos Santos Marcelo B, Blom Nikolaj, Borruel Natalia, Burgdorf Kristoffer S, Boumezbeur Fouad, Casellas Francesc, Doré Joël, Dworzynski Piotr, Guarner Francisco, Hansen Torben, Hildebrand Falk, Kaas Rolf S, Kennedy Sean, Kristiansen Karsten, Kultima Jens Roat, Léonard Pierre, Levenez Florence, Lund Ole, Moumen Bouziane, Le Paslier Denis, Pons Nicolas, Pedersen Oluf, Prifti Edi, Qin Junjie, Raes Jeroen, Sørensen Søren, Tap Julien, Tims Sebastian, Ussery David W, Yamada Takuji, Renault Pierre, Sicheritz-Ponten Thomas, Bork Peer, Wang Jun, Brunak Søren, Ehrlich S Dusko
Publisher
Springer Science and Business Media LLC
Subject
Biomedical Engineering,Molecular Medicine,Applied Microbiology and Biotechnology,Bioengineering,Biotechnology
Reference50 articles.
1. Fodor, A.A. et al. The “most wanted” taxa from the human microbiome for whole genome sequencing. PLoS ONE 7, e41294 (2012). 2. Qin, J. et al. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59–65 (2010). 3. Lukjancenko, O., Wassenaar, T.M. & Ussery, D.W. Comparison of 61 sequenced Escherichia coli genomes. Microb. Ecol. 60, 708–720 (2010). 4. Fitzsimons, M.S. et al. Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome. Genome Res. 23, 878–888 (2013). 5. Pop, M. Genome assembly reborn: recent computational challenges. Brief. Bioinform. 10, 354–366 (2009).
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