xTract: software for characterizing conformational changes of protein complexes by quantitative cross-linking mass spectrometry
Author:
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Molecular Biology,Biochemistry,Biotechnology
Link
http://www.nature.com/articles/nmeth.3631.pdf
Reference49 articles.
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2. Rappsilber, J. The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes. J. Struct. Biol. 173, 530–540 (2011).
3. Walzthoeni, T. et al. False discovery rate estimation for cross-linked peptides identified by mass spectrometry. Nat. Methods 9, 901–903 (2012).
4. Mayne, S.L.N. & Patterton, H.G. Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links. Brief. Bioinform. 12, 660–671 (2011).
5. Trnka, M.J., Baker, P.R., Robinson, P.J., Burlingame, A.L. & Chalkley, R.J. Matching cross-linked peptide spectra: only as good as the worse identification. Mol. Cell. Proteomics 13, 420–434 (2014).
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