Phylogenetic patterns recover known HIV epidemiological relationships and reveal common transmission of multiple variants
Author:
Publisher
Springer Science and Business Media LLC
Subject
Cell Biology,Microbiology (medical),Genetics,Applied Microbiology and Biotechnology,Immunology,Microbiology
Link
http://www.nature.com/articles/s41564-018-0204-9.pdf
Reference42 articles.
1. Wertheim, J. O. et al. Social and genetic networks of HIV-1 transmission in New York City. PLoS Pathog. 13, e1006000 (2017).
2. Pillay, D. et al. PANGEA-HIV: phylogenetics for generalised epidemics in Africa. Lancet Infect. Dis. 15, 259–261 (2015).
3. Lewis, F., Hughes, G. J., Rambaut, A., Pozniak, A. & Leigh Brown, A. J. Episodic sexual transmission of HIV revealed by molecular phylodynamics. PLoS Med. 5, e50 (2008).
4. Poon, A. F. et al. Near real-time monitoring of HIV transmission hotspots from routine HIV genotyping: an implementation case study. Lancet HIV 3, e231–e238 (2016).
5. Romero-Severson, E. O., Bulla, I. & Leitner, T. Phylogenetically resolving epidemiologic linkage. Proc. Natl Acad. Sci. USA 113, 2690–2695 (2016).
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