NovoSpaRc: flexible spatial reconstruction of single-cell gene expression with optimal transport
Author:
Funder
Azrieli Foundation
Deutsche Forschungsgemeinschaft
Publisher
Springer Science and Business Media LLC
Subject
General Biochemistry, Genetics and Molecular Biology
Link
https://www.nature.com/articles/s41596-021-00573-7.pdf
Reference49 articles.
1. Aldridge, S. & Teichmann, S. A. Single cell transcriptomics comes of age. Nat. Commun. 11, 4307 (2020).
2. Kulkarni, A., Anderson, A. G., Merullo, D. P. & Konopka, G. Beyond bulk: a review of single cell transcriptomics methodologies and applications. Curr. Opin. Biotechnol. 58, 129–136 (2019).
3. Macosko, E. Z. et al. Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161, 1202–1214 (2015).
4. Klein, A. M. et al. Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Cell 161, 1187–1201 (2015).
5. Birnbaum, K. D. Power in numbers: single-cell RNA-seq strategies to dissect complex tissues. Annu. Rev. Genet. 52, 203–221 (2018).
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