Hi-CO: 3D genome structure analysis with nucleosome resolution-Reference-Cited by-同舟云学术

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Hi-CO: 3D genome structure analysis with nucleosome resolution

Published:2021-05-28 Issue:7 Volume:16 Page:3439-3469
ISSN:1754-2189
Container-title:Nature Protocols
language:en
Short-container-title:Nat Protoc

Author:

Ohno Masae^ORCID,Ando Tadashi,Priest David G.,Taniguchi Yuichi^ORCID

Funder

MEXT | JST | Precursory Research for Embryonic Science and Technology

MEXT | Japan Society for the Promotion of Science

MEXT | RIKEN

Takeda Science Foundation

Mochida Memorial Foundation for Medical and Pharmaceutical Research

Suntory Foundation

Astellas Foundation for Research on Metabolic Disorders

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology

Link

http://www.nature.com/articles/s41596-021-00543-z.pdf

Reference51 articles.

1. Kornberg, R. D. Chromatin structure: a repeating unit of histones and DNA. Science 184, 868–871 (1974).

2. Kornberg, R. D. & Lorch, Y. Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome. Cell 98, 285–294 (1999).

3. Ohno, M., Priest, D. G. & Taniguchi, Y. Nucleosome-level 3D organization of the genome. Biochem. Soc. Trans. 46, 491–501 (2018).

4. Baldi, S., Korber, P. & Becker, P. B. Beads on a string—nucleosome array arrangements and folding of the chromatin fiber. Nat. Struct. Biol. 27, 109–118 (2020).

5. Li, G. et al. Highly compacted chromatin formed in vitro reflects the dynamics of transcription activation in vivo. Mol. Cell 38, 41–53 (2010).

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1. The relationship between nucleosome positioning and higher-order genome folding;Current Opinion in Cell Biology;2024-08

2. Determining mesoscale chromatin structure parameters from spatially correlated cleavage data using a coarse-grained oligonucleosome model;2024-07-29

3. In vitro reconstitution of chromatin domains shows a role for nucleosome positioning in 3D genome organization;Nature Genetics;2024-01-30

4. In vitroreconstitution of chromatin domains;2023-02-28

5. Novel biological insights revealed from the investigation of multiscale genome architecture;Computational and Structural Biotechnology Journal;2023

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