Structural evidence for intermediates during O2 formation in photosystem II
Author:
Bhowmick AsmitORCID, Hussein RanaORCID, Bogacz Isabel, Simon Philipp S.ORCID, Ibrahim Mohamed, Chatterjee Ruchira, Doyle Margaret D., Cheah Mun HonORCID, Fransson Thomas, Chernev Petko, Kim In-Sik, Makita HirokiORCID, Dasgupta Medhanjali, Kaminsky Corey J., Zhang Miao, Gätcke Julia, Haupt Stephanie, Nangca Isabela I.ORCID, Keable Stephen M., Aydin A. OrkunORCID, Tono KensukeORCID, Owada Shigeki, Gee Leland B., Fuller Franklin D., Batyuk AlexanderORCID, Alonso-Mori RobertoORCID, Holton James M.ORCID, Paley Daniel W.ORCID, Moriarty Nigel W.ORCID, Mamedov FikretORCID, Adams Paul D.ORCID, Brewster Aaron S.ORCID, Dobbek HolgerORCID, Sauter Nicholas K.ORCID, Bergmann UweORCID, Zouni AthinaORCID, Messinger JohannesORCID, Kern JanORCID, Yano JunkoORCID, Yachandra Vittal K.ORCID
Abstract
AbstractIn natural photosynthesis, the light-driven splitting of water into electrons, protons and molecular oxygen forms the first step of the solar-to-chemical energy conversion process. The reaction takes place in photosystem II, where the Mn4CaO5 cluster first stores four oxidizing equivalents, the S0 to S4 intermediate states in the Kok cycle, sequentially generated by photochemical charge separations in the reaction center and then catalyzes the O–O bond formation chemistry1–3. Here, we report room temperature snapshots by serial femtosecond X-ray crystallography to provide structural insights into the final reaction step of Kok’s photosynthetic water oxidation cycle, the S3→[S4]→S0 transition where O2 is formed and Kok’s water oxidation clock is reset. Our data reveal a complex sequence of events, which occur over micro- to milliseconds, comprising changes at the Mn4CaO5 cluster, its ligands and water pathways as well as controlled proton release through the hydrogen-bonding network of the Cl1 channel. Importantly, the extra O atom Ox, which was introduced as a bridging ligand between Ca and Mn1 during the S2→S3 transition4–6, disappears or relocates in parallel with Yz reduction starting at approximately 700 μs after the third flash. The onset of O2 evolution, as indicated by the shortening of the Mn1–Mn4 distance, occurs at around 1,200 μs, signifying the presence of a reduced intermediate, possibly a bound peroxide.
Publisher
Springer Science and Business Media LLC
Subject
Multidisciplinary
Reference63 articles.
1. Kok, B., Forbush, B. & McGloin, M. Cooperation of charges in photosynthetic O2 evolution. 1. A linear four-step mechanism. Photochem. Photobiol. 11, 457–475 (1970). 2. Yano, J. & Yachandra, V. K. Mn4Ca cluster in photosynthesis: where and how water is oxidized to dioxygen. Chem. Rev. 114, 4175–4205 (2014). 3. Cox, N., Pantazis, D. A., Neese, F. & Lubitz, W. Biological water oxidation. Acc. Chem. Res. 46, 1588–1596 (2013). 4. Kern, J. et al. Structures of the intermediates of Kok’s photosynthetic water oxidation clock. Nature 563, 421–425 (2018). 5. Suga, M. et al. An oxyl/oxo mechanism for oxygen-oxygen coupling in PSII revealed by an x-ray free-electron laser. Science 366, 334–338 (2019).
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