Clonal fitness inferred from time-series modelling of single-cell cancer genomes
Author:
Salehi Sohrab, Kabeer Farhia, Ceglia Nicholas, Andronescu Mirela, Williams Marc J.ORCID, Campbell Kieran R.ORCID, Masud Tehmina, Wang Beixi, Biele Justina, Brimhall Jazmine, Gee David, Lee Hakwoo, Ting Jerome, Zhang Allen W.ORCID, Tran HoaORCID, O’Flanagan Ciara, Dorri Fatemeh, Rusk NicoleORCID, de Algara Teresa Ruiz, Lee So Ra, Cheng Brian Yu ChiehORCID, Eirew Peter, Kono Takako, Pham Jenifer, Grewal Diljot, Lai DanielORCID, Moore Richard, Mungall Andrew J., Marra Marco A.ORCID, Hannon Gregory J., Battistoni Giorgia, Bressan Dario, Cannell Ian Gordon, Casbolt Hannah, Fatemi Atefeh, Jauset Cristina, Kovačević Tatjana, Mulvey Claire M., Nugent Fiona, Ribes Marta Paez, Pearsall Isabella, Qosaj Fatime, Sawicka Kirsty, Wild Sophia A., Williams Elena, Laks Emma, Li Yangguang, O’Flanagan Ciara H., Smith Austin, Ruiz Teresa, Lai Daniel, Roth Andrew, Balasubramanian Shankar, Lee Maximillian, Bodenmiller Bernd, Burger Marcel, Kuett Laura, Tietscher Sandra, Windhager Jonas, Boyden Edward S., Alon Shahar, Cui Yi, Emenari Amauche, Goodwin Dan, Karagiannis Emmanouil D., Sinha Anubhav, Wassie Asmamaw T., Caldas Carlos, Bruna Alejandra, Callari Maurizio, Greenwood Wendy, Lerda Giulia, Eyal-Lubling Yaniv, Rueda Oscar M., Shea Abigail, Harris Owen, Becker Robby, Grimaldi Flaminia, Harris Suvi, Vogl Sara Lisa, Weselak Joanna, Joyce Johanna A., Watson Spencer S., Vázquez-Garćıa Ignacio, Tavaré Simon, Dinh Khanh N., Fisher Eyal, Kunes Russell, Walton Nicholas A., Sa’d Mohammad Al, Chornay Nick, Dariush Ali, González-Solares Eduardo A., González-Fernández Carlos, Yoldas Aybüke Küpcü, Millar Neil, Whitmarsh Tristan, Zhuang Xiaowei, Fan Jean, Lee Hsuan, Sepúlveda Leonardo A., Xia Chenglong, Zheng Pu, McPherson Andrew, Bouchard-Côté Alexandre, Aparicio SamuelORCID, Shah Sohrab P.ORCID,
Publisher
Springer Science and Business Media LLC
Subject
Multidisciplinary
Reference48 articles.
1. Gerstung, M. et al. The evolutionary history of 2,658 cancers. Nature 578, 122–128 (2020). 2. Williams, M. J. et al. Quantification of subclonal selection in cancer from bulk sequencing data. Nat. Genet. 50, 895–903 (2018). 3. Salichos, L., Meyerson, W., Warrell, J. & Gerstein, M. Estimating growth patterns and driver effects in tumor evolution from individual samples. Nat. Commun. 11, 732 (2020). 4. Shah, S. P. et al. The clonal and mutational evolution spectrum of primary triple-negative breast cancers. Nature 486, 395–399 (2012). 5. Li, Y. et al. Patterns of somatic structural variation in human cancer genomes. Nature 578, 112–121 (2020).
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