Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic-Reference-Cited by-同舟云学术

Using nearly full-genome HIV sequence data improves phylogeny reconstruction in a simulated epidemic

Published:2016-12 Issue:1 Volume:6 Page:
ISSN:2045-2322
Container-title:Scientific Reports
language:en
Short-container-title:Sci Rep

Author:

Yebra Gonzalo, ,Hodcroft Emma B.,Ragonnet-Cronin Manon L.,Pillay Deenan,Brown Andrew J. Leigh,Fraser Christophe,Kellam Paul,de Oliveira Tulio,Dennis Ann,Hoppe Anne,Kityo Cissy,Frampton Dan,Ssemwanga Deogratius,Tanser Frank,Keshani Jagoda,Lingappa Jairam,Herbeck Joshua,Wawer Maria,Essex Max,Cohen Myron S.,Paton Nicholas,Ratmann Oliver,Kaleebu Pontiano,Hayes Richard,Fidler Sarah,Quinn Thomas,Novitsky Vladimir,Haywards Andrew,Nastouli Eleni,Morris Steven,Clark Duncan,Kozlakidis Zisis,

Publisher

Springer Science and Business Media LLC

Subject

Multidisciplinary

Link

http://www.nature.com/articles/srep39489.pdf

Reference27 articles.

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2. Wheeler, W. H. et al. Prevalence of transmitted drug resistance associated mutations and HIV-1 subtypes in new HIV-1 diagnoses, US-2006. AIDS 24, 1203–1212 (2010).

3. Frentz, D. et al. Increase in transmitted resistance to non-nucleoside reverse transcriptase inhibitors among newly diagnosed HIV-1 infections in Europe. BMC Infect. Dis. 14 (2014).

4. DeBry, R. W. et al. Dental HIV transmission? Nature. 361, 691 (1993).

5. Hué, S., Clewley, J. P., Cane, P. A. & Pillay, D. HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy. AIDS 18, 719–728 (2004).

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