Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks-Reference-Cited by-同舟云学术

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Published:2012-03 Issue:3 Volume:7 Page:562-578
ISSN:1754-2189
Container-title:Nature Protocols
language:en
Short-container-title:Nat Protoc

Author:

Trapnell Cole,Roberts Adam,Goff Loyal,Pertea Geo,Kim Daehwan,Kelley David R,Pimentel Harold,Salzberg Steven L,Rinn John L,Pachter Lior

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology

Link

http://www.nature.com/articles/nprot.2012.016.pdf

Reference44 articles.

1. Mortazavi, A., Williams, B.A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-seq. Nat. Methods 5, 621–628 (2008).

2. Cloonan, N. et al. Stem cell transcriptome profiling via massive-scale mRNA sequencing. Nat. Methods 5, 613–619 (2008).

3. Nagalakshmi, U. et al. The transcriptional landscape of the yeast genome defined by RNA sequencing. Science 320, 1344–1349 (2008).

4. Mardis, E.R. The impact of next-generation sequencing technology on genetics. Trends Genet. 24, 133–141 (2008).

5. Adams, M.D. et al. Sequence identification of 2,375 human brain genes. Nature 355, 632–634 (1992).

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