Mapping genome-wide transcription-factor binding sites using DAP-seq-Reference-Cited by-同舟云学术

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Mapping genome-wide transcription-factor binding sites using DAP-seq

Published:2017-07-20 Issue:8 Volume:12 Page:1659-1672
ISSN:1754-2189
Container-title:Nature Protocols
language:en
Short-container-title:Nat Protoc

Author:

Bartlett Anna,O'Malley Ronan C,Huang Shao-shan Carol,Galli Mary,Nery Joseph R,Gallavotti Andrea,Ecker Joseph R

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology

Link

https://www.nature.com/articles/nprot.2017.055.pdf

Reference39 articles.

1. Swinnen, G., Goossens, A. & Pauwels, L. Lessons from domestication: targeting cis-regulatory elements for crop improvement. Trends Plant Sci. http://dx.doi.org/10.1016/j.tplants.2016.01.014 (2016).

2. Deplancke, B., Alpern, D. & Gardeux, V. The genetics of transcription factor DNA binding variation. Cell http://dx.doi.org/10.1016/j.cell.2016.07.012 (2016).

3. Babu, M.M., Luscombe, N.M., Aravind, L., Gerstein, M. & Teichmann, S.A. Structure and evolution of transcriptional regulatory networks. Curr. Opin. Struct. Biol. 14, 283–291 (2004).

4. Niu, W. et al. Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans. Genome Res. 21, 245–254 (2011).

5. Negre, N. et al. A cis-regulatory map of the Drosophila genome. Nature 471, 527–531 (2011).

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