A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs-Reference-Cited by-同舟云学术

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A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs

Published:2012-06-07 Issue:7 Volume:7 Page:1260-1284
ISSN:1754-2189
Container-title:Nature Protocols
language:en
Short-container-title:Nat Protoc

Author:

Swain Martin T,Tsai Isheng J,Assefa Samual A,Newbold Chris,Berriman Matthew,Otto Thomas D

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology

Link

https://www.nature.com/articles/nprot.2012.068.pdf

Reference54 articles.

1. Chain, P.S. et al. Genome project standards in a new era of sequencing. Science 326, 236–237 (2009).

2. International Human Genome Sequencing Consortium. Finishing the euchromatic sequence of the human genome. Nature 431, 931–945 (2004).

3. Brent, M.R. Steady progress and recent breakthroughs in the accuracy of automated genome annotation. Nat. Rev. Genet. 9, 62–73 (2008).

4. Pruitt, K.D., Tatusova, T., Brown, G.R. & Maglott, D.R. NCBI reference sequences (RefSeq): current status, new features and genome annotation policy. Nucleic Acids Res. 40, D130–D135 (2012).

5. Salzberg, S.L. et al. GAGE: a critical evaluation of genome assemblies and assembly algorithms. Genome Res. 22, 557–567 (2012).

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