Integration of biological networks and gene expression data using Cytoscape-Reference-Cited by-同舟云学术

Integration of biological networks and gene expression data using Cytoscape

Published:2007-09-27 Issue:10 Volume:2 Page:2366-2382
ISSN:1754-2189
Container-title:Nature Protocols
language:en
Short-container-title:Nat Protoc

Author:

Cline Melissa S,Smoot Michael,Cerami Ethan,Kuchinsky Allan,Landys Nerius,Workman Chris,Christmas Rowan,Avila-Campilo Iliana,Creech Michael,Gross Benjamin,Hanspers Kristina,Isserlin Ruth,Kelley Ryan,Killcoyne Sarah,Lotia Samad,Maere Steven,Morris John,Ono Keiichiro,Pavlovic Vuk,Pico Alexander R,Vailaya Aditya,Wang Peng-Liang,Adler Annette,Conklin Bruce R,Hood Leroy,Kuiper Martin,Sander Chris,Schmulevich Ilya,Schwikowski Benno,Warner Guy J,Ideker Trey,Bader Gary D

Publisher

Springer Science and Business Media LLC

Subject

General Biochemistry, Genetics and Molecular Biology

Link

http://www.nature.com/articles/nprot.2007.324.pdf

Reference73 articles.

1. Kislinger, T. et al. Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling. Cell 125, 173–186 (2006).

2. Galbraith, D.W. & Birnbaum, K. Global studies of cell type-specific gene expression in plants. Annu. Rev. Plant Biol. 57, 451–475 (2006).

3. Butcher, E.C., Berg, E.L. & Kunkel, E.J. Systems biology in drug discovery. Nat. Biotechnol. 22, 1253–1259 (2004).

4. Bader, G.D. et al. Functional genomics and proteomics: charting a multidimensional map of the yeast cell. Trends Cell Biol. 13, 344–356 (2003).

5. Subramanian, A. et al. Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles. Proc. Natl. Acad. Sci. USA 102, 15545–15550 (2005).

Cited by 2052 articles. 订阅此论文施引文献订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献

1. Dynamic aromatics: Evaluating fragrance quality shifts and implementation of real-time rapid detection in Hedychium cut flowers during senescence;Postharvest Biology and Technology;2024-12

2. An integrated bioinformatics approach reveals the potential role of microRNA-30b-5p and let-7a-5p during SARS CoV-2 spike-1 mediated neuroinflammation;International Journal of Biological Macromolecules;2024-10

3. DNA Methylation and Subgenome Dominance Reveal the Role of Lipid Metabolism in Jinhu Grouper Heterosis;International Journal of Molecular Sciences;2024-09-09

4. USP24 is an ISG15 cross-reactive deubiquitinase that mediates IFN-I production by de-ISGylating the RNA helicase MOV10;2024-09-06

5. Mechanism of apoptosis in oral squamous cell carcinoma promoted by cardamonin through PI3K/AKT signaling pathway;Scientific Reports;2024-09-05