Controlled vocabularies and semantics in systems biology

Author:

Courtot Mélanie1,Juty Nick2,Knüpfer Christian3,Waltemath Dagmar4,Zhukova Anna2,Dräger Andreas5,Dumontier Michel6,Finney Andrew7,Golebiewski Martin8,Hastings Janna2,Hoops Stefan9,Keating Sarah2,Kell Douglas B1011,Kerrien Samuel2,Lawson James12,Lister Allyson1314,Lu James15,Machne Rainer16,Mendes Pedro1017,Pocock Matthew14,Rodriguez Nicolas2,Villeger Alice1017,Wilkinson Darren J13,Wimalaratne Sarala2,Laibe Camille2,Hucka Michael18,Le Novère Nicolas2

Affiliation:

1. Terry Fox Laboratory Vancouver Canada

2. Department of Computational Neurobiology, EMBL European Bioinformatics Institute, Wellcome‐Trust Genome Campus Hinxton UK

3. Institute of Computer Science, Friedrich‐Schiller University Jena Germany

4. Bioinformatics and Systems Biology, Rostock University Rostock Germany

5. Center for Bioinformatics Tuebingen, University of Tuebingen Tübingen Germany

6. Department of Biology, Carleton University Ottawa Ontario Canada

7. Ansys Abingdon UK

8. HITS gGmbH Heidelberg Germany

9. Virginia Bioinformatics Institute Blacksburg VA USA

10. Manchester Interdisciplinary Biocentre Manchester UK

11. School of Chemistry, University of Manchester Manchester UK

12. Auckland Bioengineering Institute, University of Auckland Auckland New Zealand

13. Centre for Integrated Systems Biology of Ageing and Nutrition, Institute for Ageing and Health Newcastle upon Tyne UK

14. School of Computing Science, Newcastle University Newcastle upon Tyne UK

15. Biomolecular Signaling and Control Group, Automatic Control Laboratory, Swiss Federal Institute of Technology Zurich Zurich Switzerland

16. Theoretical Biochemistry Group, University of Vienna Vienna Austria

17. School of Computer Science, University of Manchester Manchester UK

18. Division of Engineering and Applied Science, California Institute of Technology Pasadena CA USA

Publisher

EMBO

Subject

Applied Mathematics,Computational Theory and Mathematics,General Agricultural and Biological Sciences,General Immunology and Microbiology,General Biochemistry, Genetics and Molecular Biology,Information Systems

Reference51 articles.

1. Text mining and its potential applications in systems biology

2. Gene Ontology: tool for the unification of biology

3. AusbrooksR BuswellS CarlisleD DalmasS DevittS DiazA FroumentinM HunterR IonP KohlhaseM MinerR PoppelierN SmithB SoifferN SutorR WattSM(2003) Mathematical markup language (MathML) version 2.0. (2nd edn). World Wide Web Consortium Recommendation REC‐MathML2‐20031021

4. Introductory Science and Mathematics Education for 21st-Century Biologists

5. LibSBML: an API Library for SBML

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