Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues-Reference-Cited by-同舟云学术

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

Published:2019-06-17 Issue:9 Volume:17 Page:533-545
ISSN:1740-1526
Container-title:Nature Reviews Microbiology
language:en
Short-container-title:Nat Rev Microbiol

Author:

Meehan Conor J.^ORCID,Goig Galo A.,Kohl Thomas A.,Verboven Lennert^ORCID,Dippenaar Anzaan,Ezewudo Matthew,Farhat Maha R.^ORCID,Guthrie Jennifer L.^ORCID,Laukens Kris,Miotto Paolo,Ofori-Anyinam Boatema,Dreyer Viola,Supply Philip,Suresh Anita,Utpatel Christian,van Soolingen Dick,Zhou Yang,Ashton Philip M.^ORCID,Brites Daniela^ORCID,Cabibbe Andrea M.^ORCID,de Jong Bouke C.,de Vos Margaretha,Menardo Fabrizio,Gagneux Sebastien,Gao Qian,Heupink Tim H.^ORCID,Liu Qingyun,Loiseau Chloé,Rigouts Leen^ORCID,Rodwell Timothy C.,Tagliani Elisa,Walker Timothy M.,Warren Robin M.,Zhao Yanlin^ORCID,Zignol Matteo,Schito Marco,Gardy Jennifer^ORCID,Cirillo Daniela M.,Niemann Stefan,Comas Inaki^ORCID,Van Rie Annelies

Publisher

Springer Science and Business Media LLC

Subject

General Immunology and Microbiology,Microbiology,Infectious Diseases

Link

http://www.nature.com/articles/s41579-019-0214-5.pdf

Reference155 articles.

1. World Health Organization. Global tuberculosis report 2018. WHO https://www.who.int/tb/publications/global_report/archive/ (2018).

2. The CRyPTIC Consortium and the 100,000 Genomes Project. Prediction of susceptibility to first-line tuberculosis drugs by DNA sequencing. N. Engl. J. Med. 379, 1403–1415 (2018).The first large-scale study demonstrating how phenotypic testing can be replaced by WGS for first-line drug testing.

3. Gardy, J. L. et al. Whole-genome sequencing and social-network analysis of a tuberculosis outbreak. N. Engl. J. Med. 364, 730–739 (2011).

4. Cole, S. T. et al. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393, 537–544 (1998).

5. Cabibbe, A. M., Walker, T. M., Niemann, S. & Cirillo, D. M. Whole genome sequencing of Mycobacterium tuberculosis. Eur. Respir. J. 52, 1801163 (2018).

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