Reconstructing organisms in silico: genome-scale models and their emerging applications
Author:
Publisher
Springer Science and Business Media LLC
Subject
General Immunology and Microbiology,Microbiology,Infectious Diseases
Link
https://www.nature.com/articles/s41579-020-00440-4.pdf
Reference141 articles.
1. Thiele, I. & Palsson, B. Ø. A protocol for generating a high-quality genome-scale metabolic reconstruction. Nat. Protoc. 5, 93–121 (2010). A detailed protocol to reconstruct a GEM from a genome sequence.
2. Norsigian, C. J., Fang, X., Seif, Y., Monk, J. M. & Palsson, B. O. A workflow for generating multi-strain genome-scale metabolic models of prokaryotes. Nat. Protoc. 15, 1–14 (2020). This article provides a semi-automated workflow to generate strain-specific GEMs from a curated reference model.
3. Price, N. D., Reed, J. L. & Palsson, B. Ø. Genome-scale models of microbial cells: evaluating the consequences of constraints. Nat. Rev. Microbiol. 2, 886–897 (2004).
4. Lewis, N. E., Nagarajan, H. & Palsson, B. O. Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods. Nat. Rev. Microbiol. 10, 291–305 (2012).
5. Kanehisa, M. & Goto, S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 28, 27–30 (2000).
Cited by 187 articles. 订阅此论文施引文献 订阅此论文施引文献，注册后可以免费订阅5篇论文的施引文献，订阅后可以查看论文全部施引文献
1. Deciphering and designing microbial communities by genome-scale metabolic modelling;Computational and Structural Biotechnology Journal;2024-12
2. CFSA: Comparative flux sampling analysis as a guide for strain design;Metabolic Engineering Communications;2024-12
3. Engineering oleaginous red yeasts as versatile chassis for the production of oleochemicals and valuable compounds: Current advances and perspectives;Biotechnology Advances;2024-11
4. A comprehensive catalog encompassing 1376 species-level genomes reveals the core community and functional diversity of anammox microbiota;Water Research;2024-11
5. Yeast-MetaTwin for Systematically Exploring Yeast Metabolism through Retrobiosynthesis and Deep Learning;2024-09-02
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线，采集、加工和组织学术论文而形成的新型学术文献查询和分析系统，可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容，当前同舟云学术共收录了国内外主流学术期刊6万余种，收集的期刊论文及会议论文总量共计约1.5亿篇，并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询！咨询电话：010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3