Sequencing and characterizing short tandem repeats in the human genome
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Springer Science and Business Media LLC
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https://www.nature.com/articles/s41576-024-00692-3.pdf
Reference159 articles.
1. Horton, C. A. et al. Short tandem repeats bind transcription factors to tune eukaryotic gene expression. Science 381, eadd1250 (2023).
2. Ziaei Jam, H. et al. A deep population reference panel of tandem repeat variation. Nat. Commun. 14, 6711 (2023). This work provides an ensemble calling framework for tandem repeats and a phased haplotype panel to impute tandem repeats.
3. Lander, E. S. et al. Initial sequencing and analysis of the human genome. Nature 409, 860–921 (2001).
4. Halman, A., Dolzhenko, E. & Oshlack, A. STRipy: a graphical application for enhanced genotyping of pathogenic short tandem repeats in sequencing data. Hum. Mutat. 43, 859–868 (2022).
5. Depienne, C. & Mandel, J.-L. 30 years of repeat expansion disorders: what have we learned and what are the remaining challenges? Am. J. Hum. Genet. 108, 764–785 (2021). This review article provides a succinct overview of the timeline of discovery and advances in the understanding of repeat expansion disorders.
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