Chromosome-level assembly and gene annotation of Decapterus maruadsi genome using Nanopore and Hi-C technologies-Reference-Cited by-同舟云学术

Chromosome-level assembly and gene annotation of Decapterus maruadsi genome using Nanopore and Hi-C technologies

Published:2024-01-13 Issue:1 Volume:11 Page:
ISSN:2052-4463
Container-title:Scientific Data
language:en
Short-container-title:Sci Data

Author:

Chen Longyu^ORCID,Zhou Zhixiong^ORCID,Zhou Zhiyin,Yang Junyi,Deng Yacheng,Bai Yulin,Pu Fei^ORCID,Zhou Tao^ORCID,Xu Peng^ORCID

Abstract

AbstractDecapterus maruadsi is one of the representative offshore fish in the Western Pacific. Since the last century, it has become a commercially valuable marine fishery species in the Western Pacific region. Despite its high economic value, there is still a lack of high-quality reference genome of D. maruadsi in germplasm resource evaluation research. Here we report a chromosome-level reference genome of D. maruadsi based on Nanopore sequencing and Hi-C technologies. The whole genome was assembled through 169 contigs with a total length of 723.69 Mb and a contig N50 length of 24.67 Mb. By chromosome scaffolding, 23 chromosomes with a total length of 713.58 Mb were constructed. In addition, a total of 199.49 Mb repetitive elements, 33,515 protein-coding genes, and 6,431 ncRNAs were annotated in the reference genome. This reference genome of D. maruadsi will provide a solid theoretical basis not only for the subsequent development of genomic resources of D. maruadsi but also for the formulation of policies related to the protection of D. maruadsi.

Funder

Fundamental Research Funds for the Central Universities

Publisher

Springer Science and Business Media LLC

Subject

Library and Information Sciences,Statistics, Probability and Uncertainty,Computer Science Applications,Education,Information Systems,Statistics and Probability

Link

https://www.nature.com/articles/s41597-024-02912-1.pdf

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