Gap-free genome assembly of Salangid icefish Neosalanx taihuensis-Reference-Cited by-同舟云学术

Gap-free genome assembly of Salangid icefish Neosalanx taihuensis

Published:2023-11-04 Issue:1 Volume:10 Page:
ISSN:2052-4463
Container-title:Scientific Data
language:en
Short-container-title:Sci Data

Author:

Zhou Yanfeng,Zhang Xizhao^ORCID,Jian Jianbo,Wang Chenhe,Fang Di’an,Jiang Shulun,Ren Long,Ge You,Wang Hongqi,You Yang,Chen Chunhai

Abstract

AbstractNeosalanx taihuensis is widely distributed in freshwater and brackish water areas in China. Due to its high commercial value, it has been artificially introduced into many lakes and reservoirs, showing strong ecological adaptability. Here, a gap-free chromosome-level reference genome was constructed by combining short reads, PacBio HiFi long reads, Nanopore ultralong reads and Hi-C data. The reference genome of N. taihuensis was 397.29 Mb with a contig N50 of 15.61 Mb. The assembled sequences were anchored to 28 chromosomes. Furthermore, 20,024 protein-coding genes and 98.16% of the predicted genes were annotated in publicly available biological databases. This high-quality gap-free assembled genome will provide an essential reference for studying the evolution and ecological adaptability of N. taihuensis.

Publisher

Springer Science and Business Media LLC

Subject

Library and Information Sciences,Statistics, Probability and Uncertainty,Computer Science Applications,Education,Information Systems,Statistics and Probability

Link

https://www.nature.com/articles/s41597-023-02677-z.pdf

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