Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition
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Published:2023-06-01
Issue:1
Volume:10
Page:
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ISSN:2052-4463
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Container-title:Scientific Data
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language:en
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Short-container-title:Sci Data
Author:
Belser CarolineORCID, Poulain JulieORCID, Labadie KarineORCID, Gavory Frederick, Alberti Adriana, Guy Julie, Carradec QuentinORCID, Cruaud Corinne, Da Silva Corinne, Engelen Stefan, Mielle Paul, Perdereau AudeORCID, Samson Gaelle, Gas Shahinaz, Batisse Julie, Beluche Odette, Bertrand Laurie, Bohers Chloé, Bordelais Isabelle, Brun Elodie, Dubois Maria, Dumont Corinne, Zineb El Hajji, Estrada Barbara, Ettedgui Evelyne, Fernandez Patricia, Garidi Sonia, Guérin Thomas, Gorrichon Kevin, Hamon Chadia, Kientzel Lucille, Lebled Sandrine, Legrain Chloé, Lenoble Patricia, Lepretre Marine, Louesse Claudine, Magdelenat Ghislaine, Mahieu Eric, Martins Nathalie, Milani Claire, Orvain Céline, Oztas Sophie, Payen Emilie, Petit Emmanuelle, Rio Guillaume, Robert Dominique, Ronsin Muriel, Vacherie Benoit, Voolstra Christian R.ORCID, Galand Pierre E.ORCID, Flores J. MichelORCID, Hume Benjamin C. C.ORCID, Perna Gabriela, Ziegler Maren, Ruscheweyh Hans-JoachimORCID, Boissin EmilieORCID, Romac SarahORCID, Bourdin GuillaumeORCID, Iwankow Guillaume, Moulin Clémentine, Paz García David A.ORCID, Agostini SylvainORCID, Banaigs Bernard, Boss EmmanuelORCID, Bowler ChrisORCID, de Vargas Colomban, Douville EricORCID, Forcioli DidierORCID, Furla Paola, Gilson EricORCID, Lombard FabienORCID, Pesant StéphaneORCID, Reynaud Stéphanie, Sunagawa ShinichiORCID, Thomas Olivier P.ORCID, Troublé RomainORCID, Thurber Rebecca Vega, Zoccola DidierORCID, Scarpelli ClaudeORCID, Jacoby E’ Krame, Oliveira Pedro H., Aury Jean-MarcORCID, Allemand DenisORCID, Planes Serge, Wincker PatrickORCID,
Abstract
AbstractCoral reef science is a fast-growing field propelled by the need to better understand coral health and resilience to devise strategies to slow reef loss resulting from environmental stresses. Key to coral resilience are the symbiotic interactions established within a complex holobiont, i.e. the multipartite assemblages comprising the coral host organism, endosymbiotic dinoflagellates, bacteria, archaea, fungi, and viruses. Tara Pacific is an ambitious project built upon the experience of previous Tara Oceans expeditions, and leveraging state-of-the-art sequencing technologies and analyses to dissect the biodiversity and biocomplexity of the coral holobiont screened across most archipelagos spread throughout the entire Pacific Ocean. Here we detail the Tara Pacific workflow for multi-omics data generation, from sample handling to nucleotide sequence data generation and deposition. This unique multidimensional framework also includes a large amount of concomitant metadata collected side-by-side that provide new assessments of coral reef biodiversity including micro-biodiversity and shape future investigations of coral reef dynamics and their fate in the Anthropocene.
Publisher
Springer Science and Business Media LLC
Subject
Library and Information Sciences,Statistics, Probability and Uncertainty,Computer Science Applications,Education,Information Systems,Statistics and Probability
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