Genetic strategies for sex-biased persistence of gut microbes across human life

Author:

Tarracchini Chiara,Alessandri Giulia,Fontana Federico,Rizzo Sonia Mirjam,Lugli Gabriele Andrea,Bianchi Massimiliano Giovanni,Mancabelli Leonardo,Longhi Giulia,Argentini Chiara,Vergna Laura Maria,Anzalone Rosaria,Viappiani Alice,Turroni Francesca,Taurino GiuseppeORCID,Chiu Martina,Arboleya Silvia,Gueimonde MiguelORCID,Bussolati OvidioORCID,van Sinderen DouweORCID,Milani ChristianORCID,Ventura MarcoORCID

Abstract

AbstractAlthough compositional variation in the gut microbiome during human development has been extensively investigated, strain-resolved dynamic changes remain to be fully uncovered. In the current study, shotgun metagenomic sequencing data of 12,415 fecal microbiomes from healthy individuals are employed for strain-level tracking of gut microbiota members to elucidate its evolving biodiversity across the human life span. This detailed longitudinal meta-analysis reveals host sex-related persistence of strains belonging to common, maternally-inherited species, such as Bifidobacterium bifidum and Bifidobacterium longum subsp. longum. Comparative genome analyses, coupled with experiments including intimate interaction between microbes and human intestinal cells, show that specific bacterial glycosyl hydrolases related to host-glycan metabolism may contribute to more efficient colonization in females compared to males. These findings point to an intriguing ancient sex-specific host-microbe coevolution driving the selective persistence in women of key microbial taxa that may be vertically passed on to the next generation.

Publisher

Springer Science and Business Media LLC

Subject

General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry,Multidisciplinary

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