VAMPnets for deep learning of molecular kinetics
Author:
Publisher
Springer Science and Business Media LLC
Subject
General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry
Link
http://www.nature.com/articles/s41467-017-02388-1.pdf
Reference84 articles.
1. Lindorff-Larsen, K., Piana, S., Dror, R. O. & Shaw, D. E. How fast-folding proteins fold. Science 334, 517–520 (2011).
2. Plattner, N., Doerr, S., Fabritiis, G. D. & Noé, F. Complete protein-protein association kinetics in atomic detail revealed by molecular dynamics simulations and Markov modelling. Nat. Chem. 9, 1005–1011 (2017).
3. Kohlhoff, K. J. et al. Cloud-based simulations on google exacycle reveal ligand modulation of gpcr activation pathways. Nat. Chem. 6, 15–21 (2014).
4. Doerr, S., Harvey, M. J., Noé, F. & De Fabritiis, G. HTMD: high-throughput molecular dynamics for molecular discovery. J. Chem. Theory Comput. 12, 1845–1852 (2016).
5. Ufimtsev, I. S. & Martinez, T. J. Graphical processing units for quantum chemistry. Comp. Sci. Eng. 10, 26–34 (2008).
Cited by 386 articles. 订阅此论文施引文献 订阅此论文施引文献,注册后可以免费订阅5篇论文的施引文献,订阅后可以查看论文全部施引文献
1. RevGraphVAMP: A protein molecular simulation analysis model combining graph convolutional neural networks and physical constraints;Methods;2024-09
2. Optimized Collective Variable for Collapse Transition in Linear Hydrophobic Polymers: Importance of Hydration Water and End-to-End Distance;Journal of Chemical Theory and Computation;2024-08-27
3. AI meets physics: a comprehensive survey;Artificial Intelligence Review;2024-08-16
4. Improving Machine Learned Force Fields for Complex Fluids through Enhanced Sampling: A Liquid Crystal Case Study;The Journal of Physical Chemistry A;2024-08-16
5. Deep Learning Reaction Network: a machine learning framework for modeling time resolved data;2024-08-01
1.学者识别学者识别
2.学术分析学术分析
3.人才评估人才评估
"同舟云学术"是以全球学者为主线,采集、加工和组织学术论文而形成的新型学术文献查询和分析系统,可以对全球学者进行文献检索和人才价值评估。用户可以通过关注某些学科领域的顶尖人物而持续追踪该领域的学科进展和研究前沿。经过近期的数据扩容,当前同舟云学术共收录了国内外主流学术期刊6万余种,收集的期刊论文及会议论文总量共计约1.5亿篇,并以每天添加12000余篇中外论文的速度递增。我们也可以为用户提供个性化、定制化的学者数据。欢迎来电咨询!咨询电话:010-8811{复制后删除}0370
www.globalauthorid.com
TOP
Copyright © 2019-2024 北京同舟云网络信息技术有限公司 京公网安备11010802033243号 京ICP备18003416号-3