Inhibition mechanism of SARS-CoV-2 main protease by ebselen and its derivatives

Author:

Amporndanai Kangsa,Meng XiaoliORCID,Shang Weijuan,Jin ZhenmigORCID,Rogers Michael,Zhao Yao,Rao ZiheORCID,Liu Zhi-JieORCID,Yang HaitaoORCID,Zhang LeikeORCID,O’Neill Paul M.ORCID,Samar Hasnain S.ORCID

Abstract

AbstractThe SARS-CoV-2 pandemic has triggered global efforts to develop therapeutics. The main protease of SARS-CoV-2 (Mpro), critical for viral replication, is a key target for therapeutic development. An organoselenium drug called ebselen has been demonstrated to have potent Mpro inhibition and antiviral activity. We have examined the binding modes of ebselen and its derivative in Mpro via high resolution co-crystallography and investigated their chemical reactivity via mass spectrometry. Stronger Mpro inhibition than ebselen and potent ability to rescue infected cells were observed for a number of derivatives. A free selenium atom bound with cysteine of catalytic dyad has been revealed in crystallographic structures of Mpro with ebselen and MR6-31-2 suggesting hydrolysis of the enzyme bound organoselenium covalent adduct and formation of a phenolic by-product, confirmed by mass spectrometry. The target engagement with selenation mechanism of inhibition suggests wider therapeutic applications of these compounds against SARS-CoV-2 and other zoonotic beta-corona viruses.

Publisher

Springer Science and Business Media LLC

Subject

General Physics and Astronomy,General Biochemistry, Genetics and Molecular Biology,General Chemistry

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