Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra-Reference-Cited by-同舟云学术

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Spectral archives: extending spectral libraries to analyze both identified and unidentified spectra

Published:2011-05-15 Issue:7 Volume:8 Page:587-591
ISSN:1548-7091
Container-title:Nature Methods
language:en
Short-container-title:Nat Methods

Author:

Frank Ari M,Monroe Matthew E,Shah Anuj R,Carver Jeremy J,Bandeira Nuno,Moore Ronald J,Anderson Gordon A,Smith Richard D,Pevzner Pavel A

Publisher

Springer Science and Business Media LLC

Subject

Cell Biology,Molecular Biology,Biochemistry,Biotechnology

Link

http://www.nature.com/articles/nmeth.1609.pdf

Reference44 articles.

1. Stein, S.E. & Scott, D.R. Optimization and testing of mass spectral library search algorithms for compound identification. J. Am. Soc. Mass Spectrom. 5, 859–866 (1994).

2. Yates, J.R. III, Morgan, S.F., Gatlin, C.L., Griffin, P.R. & Eng, J.K. Method to compare collision-induced dissociation spectra of peptides: Potential for library searching and subtractive analysis. Anal. Chem. 70, 3557–3565 (1998).

3. Craig, R., Cortens, J.C., Fenyo, D. & Beavis, R.C. Using annotated peptide mass spectrum libraries for protein identification. J. Proteome Res. 5, 1843–1849 (2006).

4. Lam, H. et al. Development and validation of a spectral library searching method for peptide identification from ms/ms. Proteomics 7, 655–667 (2007).

5. Beer, I., Barnea, E., Ziv, T. & Admon, A. Improving large-scale proteomics by clustering of mass spectrometry data. Proteomics 4, 950–960 (2004).

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