Regulation of gene expression by small molecules

Author:

Gottesfeld Joel M.,Neely Laura,Trauger John W.,Baird Eldon E.,Dervan Peter B.

Publisher

Springer Science and Business Media LLC

Subject

Multidisciplinary

Reference1 articles.

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Specific inhibition of formation of transcription complexes by a calicheamicin oligosaccharide-a paradigm for the development of transcriptional antagonists. Proc. Natl Acad. Sci. USA 91, 9203-9207 (1994). 7. Liu, C. et al. Sequence-selective carbohydrate DNA interaction-dimeric and monomeric forms of the calicheamicin oligosaccharide interfere with transcription factor function. Proc. Natl Acad. Sci. USA 93, 940-944 (1996). 8. Wade, W. S., Mrksich, M. & Dervan, P. B. Design of peptides that bind in the minor groove of DNA at 5'-(A,T)5G(A,T)C(A,T) sequences by a dimeric side-by-side motif. /. Am. Chem. Soc. 114, 8784-8794 (1992). 9. Mrksich, M. et al. Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide l-methylimidazole-2-carboxamidenetropsin. Proc. Natl Acad. Sci. USA 89, 7586-7590 (1992). 10. Pelton, J. G. & Wemmer, D. E. Structural characterization of a 2-1 distamycin A-d(CGCAAATTTG GC) complex by two-dimensional NMR. Proc. Natl Acad. Sci. USA 86, 5723-5727 (1989). 11. White, S., Baird, E. E. & Dervan, P. B. Effects of the A-T/T-A degeneracy of pyrrole-imidazole polyamide recognition in the minor groove of DNA. Biochemistry 35, 12532-12537 (1996). 12. Parks, M. E., Baird, E. E. & Dervan, P. B. Optimization of the hairpin polyamide design for recognition of the minor groove of DNA. /. Am. Chem. Soc. 118, 6147-6152 (1996). 13. Trauger, J. W., Baird, E. E., Mrksich, M. & Dervan, P. B. Extension of sequence-specific recognition in the minor groove of DNA by pyrrole-imidazole polyamides to 9-13 base pairs. /. Am. Chem. Soc. 118, 6160-6166 (1996). 14. Kelly, J. J., Baird, E. E. & Dervan, P. B. Binding site size limit of the 2:1 pyrrole-imidazole polyamide-DNA motif. Proc. Natl Acad. Sci. USA 93, 6981-6985 (1996). 15. Geierstanger, B. H., Mrksich, M., Dervan, P. B. & Wemmer, D. E. Design of a G-C-specific minor groove-binding peptide. Science 266, 646-650 (1994). 16. Schlissel, M. S. & Brown, D. D. The transcriptional regulation of Xenopus 5S RNA genes in chromatin-the roles of active stable transcription complexes and histone HI. Cell 37, 903-913 (1984). 17. Engelke, D. R., Ng, S.-Y., Shastry, B. S. & Roeder, R. G. Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes. Cell 19, 717-728 (1980). 18. Wolffe, A. P. & Brown, D. D. Developmental regulation of two 5S ribosomal RNA genes. Science 241, 1626-1632 (1988). 19. Fairall, L., Rhodes, D. & Klug, A. Mapping of the sites of protection on a 5S-RNA gene by the Xenopus transcription factor-IIIA-a model for the interaction. /. Mol. Biol. 192, 577-591 (1986). 20. Sakonju, S. & Brown, D. D. Contact points between a positive transcription factor and the Xenopus 5S RNA gene. Cell 31, 395-405 (1982). 21. Clemens, K. R., Liao, X. B., Wolf, V., Wright, P. E. & Gottesfeld, J. M. Definition of the binding sites of individual zinc fingers in the transcription factor-IIIA-5S RNA gene complex. Proc. Natl Acad. Sci. USA 89, 10822-10826 (1992). 22. Hayes, J. J. & Tullius, T. D. Structure of the TFIIIA 5S DNA complex./. Mol. Biol. 227,407-417 (1992). 23. Clemens, K. R. et al. Relative contributions of the zinc fingers of transcription factor IIIA to the energetics of DNA binding. /. Mol. Biol. 244, 23-35 (1994). 24. Stutz, E, Gouilloud, E. & Clarkson, S. G. Oocyte and somatic tyrosine transfer-RNA genes in Xenopus laevis. Genes Dev. 3, 1190-1198 (1989). 25. Baird, E. E. & Dervan, P. B. Solid-phase synthesis of polyamides containing imidazole and pyrrole amino-acids. /. Am. Chem. Soc. 118, 6141-6146 (1996). 26. Hartl, P., Gottesfeld, J. M. & Forbes, D. J. Mitotic repression of transcription in vitro. J. Cell Biol. 120, 613-624 (1993). 27. Peterson, R. C., Doering, J. L. & Brown, D. D. Characterization of two Xenopus somatic DNAs and one minor oocyte specific 5S DNA. Cell 20, 131-141 (1980). 28. Smith, D. R., Jackson, I. J. & Brown, D. D. Domains of the positive transcription factor specific for the Xenopus 5S-RNA gene. Cell 37, 645-652 (1984). 29. Roeder, R. G. Multiple forms of DNA-dependent RNA-polymerases in Xenopus laevis-properties, purification, and subunit structure of class III RNA polymerases. /. Biol. Chem. 258, 1932-1941 (1983).

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