Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease

Author:

Liew Felicity,Efstathiou ClaudiaORCID,Fontanella Sara,Richardson Matthew,Saunders Ruth,Swieboda Dawid,Sidhu Jasmin K.,Ascough Stephanie,Moore Shona C.ORCID,Mohamed Noura,Nunag JoseORCID,King Clara,Leavy Olivia C.,Elneima Omer,McAuley Hamish J. C.,Shikotra Aarti,Singapuri AmishaORCID,Sereno MarcoORCID,Harris Victoria C.,Houchen-Wolloff LinzyORCID,Greening Neil J.ORCID,Lone Nazir I.ORCID,Thorpe Matthew,Thompson A. A. RogerORCID,Rowland-Jones Sarah L.,Docherty Annemarie B.ORCID,Chalmers James D.,Ho Ling-PeiORCID,Horsley AlexanderORCID,Raman Betty,Poinasamy Krisnah,Marks Michael,Kon Onn Min,Howard Luke S.ORCID,Wootton Daniel G.,Quint Jennifer K.,de Silva Thushan I.ORCID,Ho Antonia,Chiu ChristopherORCID,Harrison Ewen M.ORCID,Greenhalf William,Baillie J. KennethORCID,Semple Malcolm G.ORCID,Turtle Lance,Evans Rachael A.ORCID,Wain Louise V.,Brightling Christopher,Thwaites Ryan S.ORCID,Openshaw Peter J. M.ORCID, ,Abel Kathryn,Adamali H.,Adeloye Davies,Adeyemi Oluwaseun,Adrego Rita,Jimenez Laura Aguilar,Ahmad Shanaz,Haider N. Ahmad,Ahmed Rubina,Ahwireng Nyarko,Ainsworth Mark,Alamoudi Asma,Ali Mariam,Aljaroof M.,Allan Louise,Allen Richard,Allerton Lisa,Allsop Lynne,Allt Ann Marie,Almeida Paula,Al-Sheklly Bashar,Altmann Danny,Corral Maria Alvarez,Amoils Shannon,Anderson David,Antoniades Charalambos,Arbane Gill,Arias Ava Maria,Armour Cherie,Armstrong Lisa,Armstrong Natalie,Arnold David,Arnold H.,Ashish A.,Ashworth Andrew,Ashworth M.,Aslani Shahab,Assefa-Kebede Hosanna,Atkin Paul,Atkin Catherine,Aul Raminder,Aung Hnin,Austin Liam,Avram Cristina,Avramidis Nikos,Ayoub A.,Babores Marta,Baggott Rhiannon,Bagshaw J.,Baguley David,Bailey Elisabeth,Baillie J. Kenneth,Bain Steve,Bakali Majda,Bakau M.,Baldry E.,Baldwin Molly,Baldwin David,Ballard Clive,Banerjee Amita,Bang Dongchun,Barker R. E.,Barman Laura,Barran Perdita,Barratt Shaney,Barrett Fiona,Basire Donna,Basu Neil,Bates Michelle,Bates A.,Batterham R.,Baxendale Helen,Baxter Gabrielle,Bayes Hannah,Beadsworth M.,Beckett Paul,Beggs M.,Begum M.,Beirne Paul,Bell Murdina,Bell Robert,Bennett Kaytie,Beranova Eva,Bermperi Areti,Berridge Anthony,Berry Colin,Betts Sarah,Bevan Emily,Bhui Kamaldeep,Bingham Michelle,Birchall K.,Bishop Lettie,Bisnauthsing Karen,Blaikely John,Bloss Angela,Bolger Annette,Bolton Charlotte,Bonnington J.,Botkai A.,Bourne Charlotte,Bourne Michelle,Bramham Kate,Brear Lucy,Breen G.,Breeze Jonathon,Breeze Katie,Briggs Andrew,Bright E.,Brill Simon,Brindle K.,Broad Lauren,Broadley Andrew,Brookes Claire,Broome Mattew,Brown Vanessa,Brown M.,Brown Jo,Brown J.,Brown Ammani,Brown Angela,Brown M.,Brown Jeremy,Brugha Terry,Brunskill Nigel,Buch M.,Buckley Phil,Bularga Anda,Bullmore Ed,Bunker Jenny,Burden L.,Burdett Tracy,Burn David,Burns G.,Burns A.,Busby John,Butcher Robyn,Butt Al-Tahoor,Byrne S.,Cairns P.,Calder P. C.,Calvelo Ellen,Carborn H.,Card Bethany,Carr Caitlin,Carr Liesel,Carson G.,Carter Penny,Casey Anna,Cassar M.,Cavanagh Jonathon,Chablani Manish,Chalder Trudie,Chalmers James D.,Chambers Rachel,Chan Flora,Channon K. M.,Chapman Kerry,Charalambou Amanda,Chaudhuri N.,Checkley A.,Chen Jin,Cheng Yutung,Chetham Luke,Childs Caroline,Chilvers Edwin,Chinoy H.,Chiribiri A.,Chong-James K.,Choudhury N.,Choudhury Gaunab,Chowienczyk Phillip,Christie C.,Chrystal Melanie,Clark Cameron,Clark David,Clarke Jude,Clohisey S.,Coakley G.,Coburn Zach,Coetzee S.,Cole Joby,Coleman Chris,Conneh Florence,Connell David,Connolly Bronwen,Connor Lynda,Cook Amanda,Cooper Shirley,Cooper B.,Cooper Josh,Copeland Donna,Cosier Tracey,Coughlan Eamon,Coulding Martina,Coupland C.,Cox E.,Craig Thelma,Crisp P.,Cristiano Daniele,Crooks Michael,Cross Andy,Cruz Isabel,Cullinan P.,Cuthbertson D.,Daines Luke,Dalton Matthhew,Daly Patrick,Daniels Alison,Dark P.,Dasgin Joanne,David C.,David Anthony,Davies Ffyon,Davies Ellie,Davies Kim,Davies Gareth,Davies Gwyneth,Davies Melanie,Dawson Joy,Dawson Camilla,Daynes Enya,Soyza Anthony De,Deakin Bill,Deans Andrew,Deas C.,Deery Joanne,Defres Sylviane,Dell Amanda,Dempsey K.,Denneny Emma,Dennis J.,Dewar A.,Dharmagunawardena Ruvini,Diar-Bakerly Nawar,Dickens Caroline,Dipper A.,Diver Sarah,Diwanji Shalin,Dixon Myles,Djukanovic R.,Dobson Hannah,Dobson S. 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A.,Trivedi Drupad,Tunnicliffe E. M.,Turnbull Alison,Turner Kim,Turner Sarah,Turner Victoria,Turner E.,Turney Sharon,Turton Helena,Ugoji Jacinta,Ugwuoke R.,Upthegrove Rachel,Valabhji Jonathon,Ventura Maximina,Vere Joanne,Vickers Carinna,Vinson Ben,Vogiatzis Ioannis,Wade Elaine,Wade Phillip,Wainwright Tania,Wajero Lilian,Walder Sinead,Walker Samantha,Walker S.,Wall E.,Wallis Tim,Walmsley Sarah,Walsh Simon,Walsh J. A.,Warburton Louise,Ward T. J. C.,Warwick Katie,Wassall Helen,Waterson Samuel,Watson L.,Watson Ekaterina,Watson James,Webster M.,McCall J. Weir,Welch H.,Welch Carly,Welsh B.,Wessely Simon,West Sophie,Weston Heather,Wheeler Helen,White Sonia,Whitehead Victoria,Whitney J.,Whittaker S.,Whittam Beverley,Whitworth V.,Wight Andrew,Wild James,Wilkins Martin,Wilkinson Dan,Williams Nick,Williams N.,Williams B.,Williams Jenny,Williams-Howard S. 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Kenneth,Bakshi Siddharth,Barclay Wendy S.,Bari Shahedal,Barlow Gavin,Barlow Samantha L.,Barnass Stella,Barrett Nicholas,Bassford Christopher,Basude Sneha,Baxter David,Beadsworth Michael,Bernatoniene Jolanta,Berridge John,Berry Colin,Best Nicola,Bogaert Debby,Booth Laura,Bothma Pieter,Brennan Benjamin,Brittain-Long Robin,Bullock Katie,Bulteel Naomi,Burden Tom,Burtenshaw Andrew,Carlucci Nicola,Carson Gail,Caruth Vikki,Cass Emily,Catterall Benjamin W. A.,Chadwick David,Chambler Duncan,Chand Meera,Chechi Kanta,Chee Nigel,Child Jenny,Chukkambotla Srikanth,Clark Richard,Clark Tom,Clark Jordan J.,Clarke Emily A.,Clohisey Sara,Cole Sarah,Collini Paul,Connor Marie,Cooke Graham S.,Cooper Louise,Cosgrove Catherine,Coutts Audrey,Cox Helen,Cupitt Jason,Cutino-Moguel Maria-Teresa,da Silva Filipe Ana,Dalton Jo,Dark Paul,Davis Christopher,Dawson Chris,de Silva Thushan,Dervisevic Samir,Dincarslan Oslem,Carracedo Alejandra Doce,Docherty Annemarie B.,Donegan Cara,Donelly Lorna,Donnison Phil,Donohue Chloe,Santos Correia Gonçalo dos,Douthwaite Sam,Drake Thomas M.,Drummond Andrew,Dumas Marc-Emmanuel,Dunn Chris,Dunning Jake,DuRand Ingrid,Dushianthan Ahilanadan,Dyer Tristan,Dyer Philip,Elliott Angela,Evans Cariad,Evans Anthony,Eziefula Chi,Fairfield Cameron J.,Fawkes Angie,Fegan Chrisopher,Finch Lorna,Finn Adam,Fisher Lewis W. 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M.,Osagie Anthonia,O’Shea Matthew K.,Ostermann Marlies,Otahal Igor,Pais Mark,Palmarini Massimo,Palmieri Carlo,Panchatsharam Selva,Papakonstantinou Danai,Papineni Padmasayee,Paraiso Hassan,Patel Brij,Pattison Natalie,Paxton William A.,Penrice-Randal Rebekah,Pepperell Justin,Peters Mark,Phull Mandeep,Pilgrim Jack,Pintus Stefania,Pius Riinu,Planche Tim,Plotkin Daniel,Pollakis Georgios,Post Frank,Price Nicholas,Price David,Prince Tessa,Prout Rachel,Rae Nikolas,Rambaut Andrew,Reschreiter Henrik,Reynolds Tim,Richardson Neil,Ridley P. 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W.,Twagira Mary,Vallotton Nick,van Tonder Libby,Vancheeswaran Rama,Vincent Rachel,Vincent-Smith Lisa,Visuvanathan Shico,Vuylsteke Alan,Waddy Sam,Wake Rachel,Walden Andrew,Welters Ingeborg,Wham Murray,Whitehouse Tony,Whittaker Paul,Whittington Ashley,Wijesinghe Meme,Wilcock Eve,Williams Martin,Wilson Lawrence,Winchester Stephen,Wiselka Martin,Wolverson Adam,Wootton Daniel G.,Workman Andrew,Wrobel Nicola,Yates Bryan,Young Peter,Zambon Maria,Zhang J. Eunice

Abstract

AbstractOne in ten severe acute respiratory syndrome coronavirus 2 infections result in prolonged symptoms termed long coronavirus disease (COVID), yet disease phenotypes and mechanisms are poorly understood1. Here we profiled 368 plasma proteins in 657 participants ≥3 months following hospitalization. Of these, 426 had at least one long COVID symptom and 233 had fully recovered. Elevated markers of myeloid inflammation and complement activation were associated with long COVID. IL-1R2, MATN2 and COLEC12 were associated with cardiorespiratory symptoms, fatigue and anxiety/depression; MATN2, CSF3 and C1QA were elevated in gastrointestinal symptoms and C1QA was elevated in cognitive impairment. Additional markers of alterations in nerve tissue repair (SPON-1 and NFASC) were elevated in those with cognitive impairment and SCG3, suggestive of brain–gut axis disturbance, was elevated in gastrointestinal symptoms. Severe acute respiratory syndrome coronavirus 2-specific immunoglobulin G (IgG) was persistently elevated in some individuals with long COVID, but virus was not detected in sputum. Analysis of inflammatory markers in nasal fluids showed no association with symptoms. Our study aimed to understand inflammatory processes that underlie long COVID and was not designed for biomarker discovery. Our findings suggest that specific inflammatory pathways related to tissue damage are implicated in subtypes of long COVID, which might be targeted in future therapeutic trials.

Publisher

Springer Science and Business Media LLC

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