SpliceDetector: a software for detection of alternative splicing events in human and model organisms directly from transcript IDs
Author:
Publisher
Springer Science and Business Media LLC
Subject
Multidisciplinary
Link
http://www.nature.com/articles/s41598-018-23245-1.pdf
Reference43 articles.
1. Barbosa-Morais, N. L. et al. The evolutionary landscape of alternative splicing in vertebrate species. Science 338, 1587–1593, https://doi.org/10.1126/science.1230612 (2012).
2. Chen, F. C., Chen, C. J., Ho, J. Y. & Chuang, T. J. Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat. BMC bioinformatics 7, 136, https://doi.org/10.1186/1471-2105-7-136 (2006).
3. Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. & Wold, B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature methods 5, 621–628, https://doi.org/10.1038/nmeth.1226 (2008).
4. Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105–1111, https://doi.org/10.1093/bioinformatics/btp120 (2009).
5. Douglas, A. G. & Wood, M. J. RNA splicing: disease and therapy. Briefings in functional genomics 10, 151–164, https://doi.org/10.1093/bfgp/elr020 (2011).
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